PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G114800.1.p
Common NamePRUPE_ppa006909mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 391aa    MW: 42892 Da    PI: 6.1843
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G114800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.82.2e-33207265159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK vk+s++prsYYrCt+a C vkk+vers++dp++v++tYeg+H+h+
  Prupe.1G114800.1.p 207 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAACGVKKRVERSSDDPSTVVTTYEGQHTHP 265
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-35192267IPR003657WRKY domain
SuperFamilySSF1182902.09E-29199267IPR003657WRKY domain
PROSITE profilePS5081132.512202267IPR003657WRKY domain
SMARTSM007741.0E-39207266IPR003657WRKY domain
PfamPF031067.4E-27208265IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDGRETGELK TTIDQISMAN STVFSDEIIP GSSFASFASS GGSIFDMSDN NQRGSGFMDL  60
LGFQDFNMPP SLFDFSSSQT TSSSSSSMMM VMMPPHHQQQ QQPPLASPTS TPTAVALPER  120
ESTTSEVLNG STAPTTPNSS SISSSSNEAA ANKNEDQTTT KAQDEEADEQ NQDPEKTQKQ  180
LKPKKKNQKR QREPRFAFMT KSEVDNLDDG YRWRKYGQKA VKNSPYPRSY YRCTTAACGV  240
KKRVERSSDD PSTVVTTYEG QHTHPSPIMP RGTMGIAPLP DQPSAFSSSP FGVQQLLPHH  300
HYQQQQQQQQ PQYSYIYSSA PSLNISSPAY GGGAFNPSSF STGLLQERYN FGSPSSSSSA  360
VSNLLRDHGL LQDIVPQIRK EAKEEDHLHQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-272002671077Probable WRKY transcription factor 4
2lex_A2e-272002671077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G114800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007223039.10.0probable WRKY transcription factor 48
SwissprotQ9FGZ43e-55WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLM5XRR00.0M5XRR0_PRUPE; Uncharacterized protein
STRINGEMJ242380.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.12e-48WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]