PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G106600.1.p
Common NamePRUPE_ppa000792mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 1003aa    MW: 111299 Da    PI: 6.782
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G106600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.13.9e-41142219178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cqve+C+adls+ak+yhrrhkvC++hska+++lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Prupe.1G106600.1.p 142 ICQVEDCKADLSNAKDYHRRHKVCDMHSKASTALVGNAMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 219
                         5**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.4E-33137204IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.009140217IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.53E-38141222IPR004333Transcription factor, SBP-box
PfamPF031102.7E-29143216IPR004333Transcription factor, SBP-box
SMARTSM0024891770799IPR002110Ankyrin repeat
CDDcd002042.30E-9772884No hitNo description
SuperFamilySSF484031.04E-8772885IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.1E-7773884IPR020683Ankyrin repeat-containing domain
SMARTSM002482825855IPR002110Ankyrin repeat
SMARTSM002484200865895IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1003 aa     Download sequence    Send to blast
MEAEFGGKAH SYYGMKAVGK KSFEWDLNDW KWDGDLFTAS PLNSVPSACR SKQLFPVRPE  60
TPSNAGLSNS SSSGSDNISP GNEKGKRELE KRRRAVFVEN EVHDEAGSLN LNLGGQAYPI  120
MEGEVQTGKK TKIVGTTSNR AICQVEDCKA DLSNAKDYHR RHKVCDMHSK ASTALVGNAM  180
QRFCQQCSRF HVLQEFDEGK RSCRRRLAGH NRRRRKTHPD TTANGGSLND ERGSSYLLIS  240
LLRILSNMHS SSSDQTKDQD LLSHLLRSLA NLAGTADGRN ISTLLQGSQG LFNSGTSVQI  300
IKVPDVDDGV NLEDLRPVGQ CSVVPASDML ERRISSVDDP GSLQVLSGLQ ATEPLPSRDS  360
SESKSVTPEA TSRRFQLNGI DLNNSYDDSQ DYLENLGNSH VPASPGTASL GFSSWMQRDS  420
HKSSPPQTSG NSDLTSTQSP SSSSGEAQSR TDRIVFKLFG KDPNDLPFIL RSQILDWLSH  480
SPTDIESYIR PGCIILTIYL RLEKSTWEEL CCHLGSSLKT LLDAANDPFW RTGWVYTRVQ  540
HFVTFTYNGQ VVLDTPLPLK SDKSCRISYI KPIAVSVSER AQFVVKGFNL SHSATRLLCA  600
LEGKYLVQET CYDMMDGVHT TVEHDELQCL KFSCSIPDVT GRGFIEVEDH GLSSSFFPFI  660
VAEQEVCSEI CMLEGEIEVA ESADAEKLEA KNQALDFIHE LGWLLHRSRA KFRLGHSDPN  720
LDLFPFSRFR LLMEFSIEHD WCVVVKKLLS ILFEGTVDAG EHTSVEFALL DMSLLHRAVR  780
RNCRSMVEFL LKFIPNQGLT GSEQKQQVDR DGNSFLFKPD AVGPMGLTPL HVAASADGYE  840
HVLDALTDDP GKVGIEAWKN ARDSTGLTPY DYACLQSRYS YVHLVQRKIS KTLESGHVVL  900
DIPGVILDRN GKQKQSEAYK PSRVASLETE KIEMKAILRH CKLCAQKPAY GNTRSLVYRP  960
AMLSMVAVAA VCVCVALLFK STPEVLFVFQ PFRWELLKFG SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-301422161084squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.204420.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G106600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223092e-65KJ622309.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007225380.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLM5XKY40.0M5XKY4_PRUPE; Uncharacterized protein
STRINGEMJ265790.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]