PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G087700.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 200aa    MW: 22256 Da    PI: 8.0932
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G087700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.13.1e-201563149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        k+ien+  r +tfskRr gi KKA+EL  LC+aev v++fs++gk y y
  Prupe.1G087700.1.p 15 KKIENEDDRLITFSKRRSGIYKKASELAALCGAEVGVVVFSPKGKPYSY 63
                        68*******************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.1767IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-28766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-26881IPR002100Transcription factor, MADS-box
CDDcd002651.49E-32877No hitNo description
PRINTSPR004045.5E-21929IPR002100Transcription factor, MADS-box
PfamPF003194.3E-241663IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-212944IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-214465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEGRRTRGRQ KIDIKKIENE DDRLITFSKR RSGIYKKASE LAALCGAEVG VVVFSPKGKP  60
YSYGSPGIEY VANRFLNVVA DQNADERISH GILEVYRQAR VYEVNENHNE LVGQLEAVKE  120
QSKALQQLVE ERGSGEQQCW WEPALHNQDL QGVKNIHESF KGLVNHVCTH LKLRYGSSSN  180
SFDIGIASSS AALPFHAAT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G087700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226538.21e-147agamous-like MADS-box protein AGL29
TrEMBLA0A251QUG41e-146A0A251QUG4_PRUPE; Uncharacterized protein
STRINGXP_008223733.11e-134(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.11e-36AGAMOUS-like 64