PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G032200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 152aa MW: 17823.7 Da PI: 10.4421 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25.2 | 2.2e-08 | 19 | 58 | 6 | 45 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k +r+v+fskRr g++ K + + +ae+ ++++s g+ Prupe.1G032200.1.p 19 KNRRYVSFSKRRSGLFSKGKDFCKKFEAEIGIVVLSGAGR 58 679********************************98886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0094 | 1 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.479 | 19 | 60 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-10 | 19 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-11 | 19 | 81 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MKRKASEVTM EQKEAKVYKN RRYVSFSKRR SGLFSKGKDF CKKFEAEIGI VVLSGAGRPY 60 WSPDNPSLDA VLDRFMQSDQ APTNAIDFKV RLQKKRKREE PDNEVQGQLA EEVKSCRTVK 120 DMFSLRDKYL EMRIGCLRHK IRNHYMYKPM F* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G032200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020410301.1 | 9e-84 | agamous-like MADS-box protein AGL31 | ||||
TrEMBL | A0A251QS39 | 1e-108 | A0A251QS39_PRUPE; Uncharacterized protein | ||||
STRING | EMJ26081 | 5e-91 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18848 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-13 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G032200.1.p |