PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.1G030500.1.p | ||||||||
Common Name | PRUPE_ppa017791mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 27429.7 Da PI: 9.8946 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.8 | 3.4e-07 | 83 | 128 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h +Er RR++ ++++ L ++lP+ a K +K i++++ I++Lq Prupe.1G030500.1.p 83 HMLNERMRREKQKQSYMALHSMLPTgA------KSDKNWIVQMTAMNIQQLQ 128 6789*********************66......899999*****99999998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.67E-10 | 77 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.537 | 78 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.08E-4 | 82 | 129 | No hit | No description |
Pfam | PF00010 | 1.3E-4 | 83 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-6 | 83 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MNMDQYILEA LEGEFLLHES LPVLNQRAFV PYTSRPITEK GLDKPPNSMN MNKRMVQFLR 60 KSWAPATARI VTGDDCKERG FRHMLNERMR REKQKQSYMA LHSMLPTGAK SDKNWIVQMT 120 AMNIQQLQRY KEELRKRNME VEAILVANEK ERVNWSKIRL RVANPTSGVD SMLEVLRCLQ 180 YLGLKARNVR SNFSAQEFSA ELEIETKIGA AEIEEALQET LYEAERKLRF SFPGR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.1G030500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007227265.1 | 1e-175 | transcription factor bHLH92 isoform X2 | ||||
TrEMBL | M5XRD4 | 1e-174 | M5XRD4_PRUPE; Uncharacterized protein | ||||
STRING | EMJ28464 | 1e-175 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12572 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43650.1 | 3e-45 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.1G030500.1.p |
Entrez Gene | 18790534 |