PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_7400V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CPP
Protein Properties Length: 1268aa    MW: 138014 Da    PI: 7.5831
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_7400V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.73.2e-15785823341
               TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                       +k+CnCkkskClk+YCeCfaag +C  +C C dC+Nk e
  Pp3c9_7400V3.2.p 785 CKRCNCKKSKCLKLYCECFAAGLYCVGSCACRDCFNKPE 823
                       79**********************************976 PP
2TCR512.9e-16869908140
               TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                       ++k+gCnCkks ClkkYCeC++ag+ Cse C+Ce+C+Nk 
  Pp3c9_7400V3.2.p 869 RHKRGCNCKKSLCLKKYCECYQAGVGCSEGCRCEGCMNKY 908
                       589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.0E-14783824IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.332784909IPR005172CRC domain
PfamPF036387.5E-11786821IPR005172CRC domain
SMARTSM011142.3E-17869910IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.3E-11871907IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 1268 aa     Download sequence    Send to blast
MMTRGIKAAP EKVDRELESG PDMGSPARRE PIPPVSDMQD SPLFKYLCEL SPIQPAKSVH  60
HAQTYNEMTF PQEHRIFASP RSARRSSSSS LKRFVAAERF SAQAQAEGRE SLGWHQTPTF  120
SRSTLSDGAP SSSPLKRSSG DHQVTPCSRR QTEALASSQS DGAKVEVSRD DVYVAEDPGG  180
QGKFGSSIHL KPEPASCEMD RTAVVNARFQ TQFTDYHQLD PAVSAAMPSE VVSCIDGKDE  240
MLEVTRTEHN YATERRQSTS SLISHPIDCV LPSQESKCHE QSDHRRVSVT SSSHIEDHGL  300
SFSTVAKGSP ELDRETTAMA YFLAGNQDLG QDTGEEWSED SSEVVVPRLP LRPTPGYSVK  360
PSDMINERVV KQEKRMVDAI TPKSGLVPST EDGHDTDTIL ATENVNHQQS VLSQRVDNAG  420
QRGFRRRCLD FDASVARRKS LGSMSGRKSL GSRLKDCSGI SVADDSNVSG FGDVAPASSD  480
ATTTRVRAPP NDFSNSNDTS RVDSDSGLHT REAGSPVCAD TFGTTAKLPL TSCSHQKNMD  540
VLNAKTGEAH SRKVQNSGAS PAGTPPEGVR RSPRNRPTGI GLHLNSLTSS MSFKRDYSSV  600
RGESSKGVLA TVLGLQPVAR TDLTEDSLSE GLGSTGYSAN LNQNFNSGVD RQALDNSNNG  660
LTKKLDYHSQ VDSRTLMELN GAETTLPASS IKRVNIPAPD FTSLNIENLS PLEEPFSLTP  720
AAHLPRLVSP RGQKRPQPHH QELMQQPEGE AVDELLDSPQ SAKRRRLSRR KSTVSSQSER  780
SGDGCKRCNC KKSKCLKLYC ECFAAGLYCV GSCACRDCFN KPEYIETVIN TRQQIESRNP  840
LAFAPKIVQG AESSPVPGDE VLDTPASARH KRGCNCKKSL CLKKYCECYQ AGVGCSEGCR  900
CEGCMNKYGR KEGPEGDEKD GEQANFVRED SQSEDPIELL NRMSGKTDRL RDNSTKPNLS  960
PNTPTFEYDL HGRPMHSLRT SLRKRIDPSD ELCHSPLAQP VSRPSKSPTR FAHALDAFHL  1020
VPSYQGHSDA DFSMSGAGDS PMTTPTFARM GHLSPRWDGL GDLCTLTPMQ TLAPLRPTPG  1080
SSCITVERPG ASPAFSSHLT ESPYQAAAST NVHQRHASSR HWSPHSPRFR QPAPRSPFDT  1140
PRQSQLSCTD QGHPTPLTPA MQSYQLLSGK NLQSELELAK VNVADDDGTP EFTKYADETR  1200
DSSPSRSTVT KSSSPKQKRV TPPRYSGNRE PSNSSNGGCG SNSLASSPVS RNARKFILQA  1260
LPTFTND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-217789154126Protein lin-54 homolog
5fd3_B6e-217789154126Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1762766KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024384565.10.0uncharacterized protein LOC112286675 isoform X1
TrEMBLA0A2K1K2D40.0A0A2K1K2D4_PHYPA; Uncharacterized protein
STRINGPP1S220_14V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.18e-60Tesmin/TSO1-like CXC domain-containing protein