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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_7400V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | CPP | ||||||||
Protein Properties | Length: 1268aa MW: 138014 Da PI: 7.5831 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47.7 | 3.2e-15 | 785 | 823 | 3 | 41 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YCeCfaag +C +C C dC+Nk e Pp3c9_7400V3.1.p 785 CKRCNCKKSKCLKLYCECFAAGLYCVGSCACRDCFNKPE 823 79**********************************976 PP | |||||||
2 | TCR | 51 | 2.9e-16 | 869 | 908 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks ClkkYCeC++ag+ Cse C+Ce+C+Nk Pp3c9_7400V3.1.p 869 RHKRGCNCKKSLCLKKYCECYQAGVGCSEGCRCEGCMNKY 908 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.0E-14 | 783 | 824 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 34.332 | 784 | 909 | IPR005172 | CRC domain |
Pfam | PF03638 | 7.5E-11 | 786 | 821 | IPR005172 | CRC domain |
SMART | SM01114 | 2.3E-17 | 869 | 910 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.3E-11 | 871 | 907 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 1268 aa Download sequence Send to blast |
MMTRGIKAAP EKVDRELESG PDMGSPARRE PIPPVSDMQD SPLFKYLCEL SPIQPAKSVH 60 HAQTYNEMTF PQEHRIFASP RSARRSSSSS LKRFVAAERF SAQAQAEGRE SLGWHQTPTF 120 SRSTLSDGAP SSSPLKRSSG DHQVTPCSRR QTEALASSQS DGAKVEVSRD DVYVAEDPGG 180 QGKFGSSIHL KPEPASCEMD RTAVVNARFQ TQFTDYHQLD PAVSAAMPSE VVSCIDGKDE 240 MLEVTRTEHN YATERRQSTS SLISHPIDCV LPSQESKCHE QSDHRRVSVT SSSHIEDHGL 300 SFSTVAKGSP ELDRETTAMA YFLAGNQDLG QDTGEEWSED SSEVVVPRLP LRPTPGYSVK 360 PSDMINERVV KQEKRMVDAI TPKSGLVPST EDGHDTDTIL ATENVNHQQS VLSQRVDNAG 420 QRGFRRRCLD FDASVARRKS LGSMSGRKSL GSRLKDCSGI SVADDSNVSG FGDVAPASSD 480 ATTTRVRAPP NDFSNSNDTS RVDSDSGLHT REAGSPVCAD TFGTTAKLPL TSCSHQKNMD 540 VLNAKTGEAH SRKVQNSGAS PAGTPPEGVR RSPRNRPTGI GLHLNSLTSS MSFKRDYSSV 600 RGESSKGVLA TVLGLQPVAR TDLTEDSLSE GLGSTGYSAN LNQNFNSGVD RQALDNSNNG 660 LTKKLDYHSQ VDSRTLMELN GAETTLPASS IKRVNIPAPD FTSLNIENLS PLEEPFSLTP 720 AAHLPRLVSP RGQKRPQPHH QELMQQPEGE AVDELLDSPQ SAKRRRLSRR KSTVSSQSER 780 SGDGCKRCNC KKSKCLKLYC ECFAAGLYCV GSCACRDCFN KPEYIETVIN TRQQIESRNP 840 LAFAPKIVQG AESSPVPGDE VLDTPASARH KRGCNCKKSL CLKKYCECYQ AGVGCSEGCR 900 CEGCMNKYGR KEGPEGDEKD GEQANFVRED SQSEDPIELL NRMSGKTDRL RDNSTKPNLS 960 PNTPTFEYDL HGRPMHSLRT SLRKRIDPSD ELCHSPLAQP VSRPSKSPTR FAHALDAFHL 1020 VPSYQGHSDA DFSMSGAGDS PMTTPTFARM GHLSPRWDGL GDLCTLTPMQ TLAPLRPTPG 1080 SSCITVERPG ASPAFSSHLT ESPYQAAAST NVHQRHASSR HWSPHSPRFR QPAPRSPFDT 1140 PRQSQLSCTD QGHPTPLTPA MQSYQLLSGK NLQSELELAK VNVADDDGTP EFTKYADETR 1200 DSSPSRSTVT KSSSPKQKRV TPPRYSGNRE PSNSSNGGCG SNSLASSPVS RNARKFILQA 1260 LPTFTND* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 6e-21 | 778 | 915 | 4 | 126 | Protein lin-54 homolog |
5fd3_B | 6e-21 | 778 | 915 | 4 | 126 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 762 | 766 | KRRRL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024384565.1 | 0.0 | uncharacterized protein LOC112286675 isoform X1 | ||||
TrEMBL | A0A2K1K2D4 | 0.0 | A0A2K1K2D4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S220_14V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP993 | 17 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 8e-60 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_7400V3.1.p |