PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c9_6780V3.2.p

Common Name

PHYPADRAFT_92125

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

TALE

Protein Properties

Length: 1031aa MW: 112324 Da PI: 6.3572

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_6780V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.2	6.4e-09	650	687	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++ LAk++gLt +qV++WF N R + Pp3c9_6780V3.2.p 650 FEHflHPYPKDVDKMSLAKQTGLTRSQVSNWFINARVR 687 554458******************************88 PP
2	BELL	87.1	1.9e-28	516	586	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r +l+ kk kL +l+eV+ rY++y+e lq vi F+ ag +a+pYt lAl+a+SrhFrcLkdai +q+ Pp3c9_6780V3.2.p 516 RVDLELKKQKLNLMLDEVETRYRRYCEHLQLVITGFNSQAGPSTATPYTILALQAMSRHFRCLKDAIGSQL 586 67899**************************************************************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.4E-13	403	584	IPR006563	POX domain
Pfam	PF07526	2.1E-30	409	582	IPR006563	POX domain
PROSITE profile	PS50071	12.034	628	691	IPR001356	Homeobox domain
CDD	cd00086	2.90E-12	631	692	No hit	No description
SMART	SM00389	3.8E-9	631	695	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.27E-16	632	698	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-27	634	697	IPR009057	Homeodomain-like
Pfam	PF05920	1.6E-17	648	687	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 1031 aa Download sequence Send to blast
MDPSEPLRAY GADSDKNLQT DSYNGSLMAS DSYNFLTGAG VLDVPLKEQN ESTHAHKSSK 60 EGAAQNSSGP SIETLYTNHE PSPSSGSFPG RSSPAPECNS WDNINGGGLY GNSNMQNILI 120 SGSGMMAAPT STTTAQLLIG GLHGGSFNDG SESDQGSIYY TSSNHHDDSM AQLYYVNAAA 180 GFSNPGFHSD GRQAGLVTTS LYPSQHGGTS AQQSSTDQSQ QQFGVPFISH ASLAHGSVRQ 240 RALESTGAVP ILSLHEHSGS HDGNHHYNWR NGGNEHPFLP MNAESNQNHQ SQFDTDLPQY 300 AMSRASHADL SHMQRTDHLQ SEISLHMDRS HGSSTTAQAA AMAKTKELAS RYLTGANADL 360 SRFRTPSRDD VVGIGARFLQ KHNSGGGRKH LESSNYSGPS GTAGSSNHIS ASKFERSAQA 420 ILNEVCSVTP LKRPPKPIRS PDQQHWSVAG GRSIGADANL TYTGRDDRSA MLAGEVDSVR 480 DPALFVTASS LVTVSQLPLD SETVQELADA ARCENRVDLE LKKQKLNLML DEVETRYRRY 540 CEHLQLVITG FNSQAGPSTA TPYTILALQA MSRHFRCLKD AIGSQLKIVK RSFGEDERTG 600 QGETSRIRYV DQQIRQQRTL QQLGMLQQHA WRPQRGLPER AVSVLRAWLF EHFLHPYPKD 660 VDKMSLAKQT GLTRSQVSNW FINARVRLWK PMVEEMYVEE QKEYPGDHTA ALAQSERMAR 720 DQVDIESHTY EQYKGGRGHT GLLQEISAGA QSSRLPNGLK RNEDREHDTG ASVSEAGGIS 780 SDTNAELYSQ LIPRSHHLDI GAAGNYNQEG REAKKPRTSG SDAFNMTSST TLMHPGMDVE 840 ASESCARTQN FSSGGELDLQ RKSDVDFGTQ CQVLNQINQD ENGYTISQQG TTIVDQIEPS 900 VASGTFAAYN SNIGHRYGNE DYSSRTISAA LTTSTGVSLT LGLCHCDTNQ LRSSLVSPIL 960 VKSTYNMDVN DQMNQLNGVE HFESRTKSVS NNCQSSATMS NGHYNQISAV QDDSDNSTQQ 1020 LSPHHEFVTS *

Sequence ? help Back to Top

Protein Sequence Length: 1031 aa Download sequence Send to blast

MDPSEPLRAY GADSDKNLQT DSYNGSLMAS DSYNFLTGAG VLDVPLKEQN ESTHAHKSSK  60
EGAAQNSSGP SIETLYTNHE PSPSSGSFPG RSSPAPECNS WDNINGGGLY GNSNMQNILI  120
SGSGMMAAPT STTTAQLLIG GLHGGSFNDG SESDQGSIYY TSSNHHDDSM AQLYYVNAAA  180
GFSNPGFHSD GRQAGLVTTS LYPSQHGGTS AQQSSTDQSQ QQFGVPFISH ASLAHGSVRQ  240
RALESTGAVP ILSLHEHSGS HDGNHHYNWR NGGNEHPFLP MNAESNQNHQ SQFDTDLPQY  300
AMSRASHADL SHMQRTDHLQ SEISLHMDRS HGSSTTAQAA AMAKTKELAS RYLTGANADL  360
SRFRTPSRDD VVGIGARFLQ KHNSGGGRKH LESSNYSGPS GTAGSSNHIS ASKFERSAQA  420
ILNEVCSVTP LKRPPKPIRS PDQQHWSVAG GRSIGADANL TYTGRDDRSA MLAGEVDSVR  480
DPALFVTASS LVTVSQLPLD SETVQELADA ARCENRVDLE LKKQKLNLML DEVETRYRRY  540
CEHLQLVITG FNSQAGPSTA TPYTILALQA MSRHFRCLKD AIGSQLKIVK RSFGEDERTG  600
QGETSRIRYV DQQIRQQRTL QQLGMLQQHA WRPQRGLPER AVSVLRAWLF EHFLHPYPKD  660
VDKMSLAKQT GLTRSQVSNW FINARVRLWK PMVEEMYVEE QKEYPGDHTA ALAQSERMAR  720
DQVDIESHTY EQYKGGRGHT GLLQEISAGA QSSRLPNGLK RNEDREHDTG ASVSEAGGIS  780
SDTNAELYSQ LIPRSHHLDI GAAGNYNQEG REAKKPRTSG SDAFNMTSST TLMHPGMDVE  840
ASESCARTQN FSSGGELDLQ RKSDVDFGTQ CQVLNQINQD ENGYTISQQG TTIVDQIEPS  900
VASGTFAAYN SNIGHRYGNE DYSSRTISAA LTTSTGVSLT LGLCHCDTNQ LRSSLVSPIL  960
VKSTYNMDVN DQMNQLNGVE HFESRTKSVS NNCQSSATMS NGHYNQISAV QDDSDNSTQQ  1020
LSPHHEFVTS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	2e-16	637	694	1	58	Homeobox protein Meis1
4xrs_B	2e-16	637	694	1	58	Homeobox protein Meis1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024384244.1	0.0	BEL1-like homeodomain protein 2
Refseq	XP_024384245.1	0.0	BEL1-like homeodomain protein 2
TrEMBL	A0A2K1K2B6	0.0	A0A2K1K2B6_PHYPA; Uncharacterized protein
STRING	PP1S220_67V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	2e-67	BEL1-like homeodomain 7

Link Out ? help Back to Top
Phytozome	Pp3c9_6780V3.2.p
Entrez Gene	5940587

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]