PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_6780V3.2.p | ||||||||
Common Name | PHYPADRAFT_92125 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | TALE | ||||||||
Protein Properties | Length: 1031aa MW: 112324 Da PI: 6.3572 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.2 | 6.4e-09 | 650 | 687 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++ LAk++gLt +qV++WF N R + Pp3c9_6780V3.2.p 650 FEHflHPYPKDVDKMSLAKQTGLTRSQVSNWFINARVR 687 554458******************************88 PP | |||||||
2 | BELL | 87.1 | 1.9e-28 | 516 | 586 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r +l+ kk kL +l+eV+ rY++y+e lq vi F+ ag +a+pYt lAl+a+SrhFrcLkdai +q+ Pp3c9_6780V3.2.p 516 RVDLELKKQKLNLMLDEVETRYRRYCEHLQLVITGFNSQAGPSTATPYTILALQAMSRHFRCLKDAIGSQL 586 67899**************************************************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.4E-13 | 403 | 584 | IPR006563 | POX domain |
Pfam | PF07526 | 2.1E-30 | 409 | 582 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.034 | 628 | 691 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.90E-12 | 631 | 692 | No hit | No description |
SMART | SM00389 | 3.8E-9 | 631 | 695 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.27E-16 | 632 | 698 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 634 | 697 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.6E-17 | 648 | 687 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 1031 aa Download sequence Send to blast |
MDPSEPLRAY GADSDKNLQT DSYNGSLMAS DSYNFLTGAG VLDVPLKEQN ESTHAHKSSK 60 EGAAQNSSGP SIETLYTNHE PSPSSGSFPG RSSPAPECNS WDNINGGGLY GNSNMQNILI 120 SGSGMMAAPT STTTAQLLIG GLHGGSFNDG SESDQGSIYY TSSNHHDDSM AQLYYVNAAA 180 GFSNPGFHSD GRQAGLVTTS LYPSQHGGTS AQQSSTDQSQ QQFGVPFISH ASLAHGSVRQ 240 RALESTGAVP ILSLHEHSGS HDGNHHYNWR NGGNEHPFLP MNAESNQNHQ SQFDTDLPQY 300 AMSRASHADL SHMQRTDHLQ SEISLHMDRS HGSSTTAQAA AMAKTKELAS RYLTGANADL 360 SRFRTPSRDD VVGIGARFLQ KHNSGGGRKH LESSNYSGPS GTAGSSNHIS ASKFERSAQA 420 ILNEVCSVTP LKRPPKPIRS PDQQHWSVAG GRSIGADANL TYTGRDDRSA MLAGEVDSVR 480 DPALFVTASS LVTVSQLPLD SETVQELADA ARCENRVDLE LKKQKLNLML DEVETRYRRY 540 CEHLQLVITG FNSQAGPSTA TPYTILALQA MSRHFRCLKD AIGSQLKIVK RSFGEDERTG 600 QGETSRIRYV DQQIRQQRTL QQLGMLQQHA WRPQRGLPER AVSVLRAWLF EHFLHPYPKD 660 VDKMSLAKQT GLTRSQVSNW FINARVRLWK PMVEEMYVEE QKEYPGDHTA ALAQSERMAR 720 DQVDIESHTY EQYKGGRGHT GLLQEISAGA QSSRLPNGLK RNEDREHDTG ASVSEAGGIS 780 SDTNAELYSQ LIPRSHHLDI GAAGNYNQEG REAKKPRTSG SDAFNMTSST TLMHPGMDVE 840 ASESCARTQN FSSGGELDLQ RKSDVDFGTQ CQVLNQINQD ENGYTISQQG TTIVDQIEPS 900 VASGTFAAYN SNIGHRYGNE DYSSRTISAA LTTSTGVSLT LGLCHCDTNQ LRSSLVSPIL 960 VKSTYNMDVN DQMNQLNGVE HFESRTKSVS NNCQSSATMS NGHYNQISAV QDDSDNSTQQ 1020 LSPHHEFVTS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 637 | 694 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 637 | 694 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024384244.1 | 0.0 | BEL1-like homeodomain protein 2 | ||||
Refseq | XP_024384245.1 | 0.0 | BEL1-like homeodomain protein 2 | ||||
TrEMBL | A0A2K1K2B6 | 0.0 | A0A2K1K2B6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S220_67V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16400.1 | 2e-67 | BEL1-like homeodomain 7 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_6780V3.2.p |
Entrez Gene | 5940587 |
Publications ? help Back to Top | |||
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