PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Expression |

Regulation |

Basic Information? help Back to Top

TF ID

Pp3c9_5650V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NF-YC

Protein Properties

Length: 335aa MW: 37614.2 Da PI: 8.4755

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_5650V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	156.4	4.7e-49	78	196	1	102
NF-YC 1 qlksfwekq.................iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkk 76 ql++fw++q + + t+fknh+lPlarikki+k+dedvkmi+aeaPvl++kace+fileltlrsw+h+eenkrrtl++ Pp3c9_5650V3.2.p 78 QLQMFWQQQnqemeqlnekssksellMTHLTEFKNHQLPLARIKKIMKSDEDVKMIAAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQR 170 678888877778888888888888889999************************************************************* PP NF-YC 77 sdiaaavtrtdifdflvdivprdelk 102 +dia a+tr difdflvdivprdelk Pp3c9_5650V3.2.p 171 NDIAGAITRGDIFDFLVDIVPRDELK 196 *********************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.03E-33	53	186	IPR009072	Histone-fold
Pfam	PF00808	4.1E-21	114	177	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.5E-36	115	192	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MRALAGSFNR EFAGAEVWRE SLAAAVAMAS NQHGLASLSS AKPQSSAGAT TTAQQSFQQG 60 KHQMQGQGQM NSHMQHQQLQ MFWQQQNQEM EQLNEKSSKS ELLMTHLTEF KNHQLPLARI 120 KKIMKSDEDV KMIAAEAPVL FAKACEMFIL ELTLRSWIHT EENKRRTLQR NDIAGAITRG 180 DIFDFLVDIV PRDELKEEET AVPWSGGGGE QVQYGGMFYP SMPPQSVHYP MGAPVSIYWF 240 VLESREYSKK CFSCCTQTAT EIGIGLVIST RILHSWKEKL LRKGSSLREH ALLLIYHSSQ 300 VFSFGESSAF TPKPVSLILL VYISRVCFVA KVKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-48	108	192	11	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	170	RRTLQRN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.8100	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024384329.1	1e-175	nuclear transcription factor Y subunit C-2-like
TrEMBL	A0A2K1K267	0.0	A0A2K1K267_PHYPA; Uncharacterized protein
STRING	PP1S370_63V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-55	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Pp3c9_5650V3.2.p