PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_5650V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NF-YC
Protein Properties Length: 335aa    MW: 37614.2 Da    PI: 8.4755
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_5650V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC156.44.7e-49781961102
             NF-YC   1 qlksfwekq.................iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkk 76 
                       ql++fw++q                 + + t+fknh+lPlarikki+k+dedvkmi+aeaPvl++kace+fileltlrsw+h+eenkrrtl++
  Pp3c9_5650V3.1.p  78 QLQMFWQQQnqemeqlnekssksellMTHLTEFKNHQLPLARIKKIMKSDEDVKMIAAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQR 170
                       678888877778888888888888889999*************************************************************** PP

             NF-YC  77 sdiaaavtrtdifdflvdivprdelk 102
                       +dia a+tr difdflvdivprdelk
  Pp3c9_5650V3.1.p 171 NDIAGAITRGDIFDFLVDIVPRDELK 196
                       ***********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.03E-3353186IPR009072Histone-fold
PfamPF008084.1E-21114177IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.5E-36115192IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MRALAGSFNR EFAGAEVWRE SLAAAVAMAS NQHGLASLSS AKPQSSAGAT TTAQQSFQQG  60
KHQMQGQGQM NSHMQHQQLQ MFWQQQNQEM EQLNEKSSKS ELLMTHLTEF KNHQLPLARI  120
KKIMKSDEDV KMIAAEAPVL FAKACEMFIL ELTLRSWIHT EENKRRTLQR NDIAGAITRG  180
DIFDFLVDIV PRDELKEEET AVPWSGGGGE QVQYGGMFYP SMPPQSVHYP MGAPVSIYWF  240
VLESREYSKK CFSCCTQTAT EIGIGLVIST RILHSWKEKL LRKGSSLREH ALLLIYHSSQ  300
VFSFGESSAF TPKPVSLILL VYISRVCFVA KVKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-481081921195NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164170RRTLQRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.81000.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024384329.11e-175nuclear transcription factor Y subunit C-2-like
TrEMBLA0A2K1K2670.0A0A2K1K267_PHYPA; Uncharacterized protein
STRINGPP1S370_63V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-55nuclear factor Y, subunit C2