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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_3300V3.1.p | ||||||||
Common Name | PHYPADRAFT_169585 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 431aa MW: 47239 Da PI: 6.7628 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.3 | 2.1e-11 | 354 | 399 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + +++L ++veY+ksLq Pp3c9_3300V3.1.p 354 SIAERVRRTKISERMKKLQDLVPSM----DKQTNTSDMLDETVEYVKSLQ 399 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.342 | 348 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.42E-16 | 351 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.64E-11 | 352 | 403 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-16 | 353 | 417 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-13 | 354 | 404 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-8 | 354 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MLHSGNYSHI SQAPLAVSVG LEHFPYSVYQ GYPGNQTRPV PTTQRNTNMP RGEIGDGNAH 60 VGPLLHRGSP PRHSTFNLEE KYVLEAKSEA LDANVLRNGA TYGTIYENSR PSAMSTTVPL 120 LHRYHSAPAS TYLTQMNEEQ IGNTVMSSIF TDGGLTPITE NMDVERLGCG NSNSNEFEHY 180 LAPENDFSRR AAFSALHREE ATPDSFATTF QNSKNAVLCQ SSLSSAGLSQ PNISMQDRMA 240 ENGSEKNSSR NSDDNNHLIS GYAASIYSQE DCHWKSPTSP AKRQRGLDGE SETSSGSVEG 300 STYRKSQQGG LIRHMSLPHS TNGDSSSPGV EDNTFHTVPM RTRAKRGCAT HPRSIAERVR 360 RTKISERMKK LQDLVPSMDK QTNTSDMLDE TVEYVKSLQR QVQELSDTVV RLEAAAAQKV 420 SNTSHSPEIA * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.8719 | 0.0 | gametophore| protonema| sporophyte |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00308 | DAP | Transfer from AT2G42280 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385117.1 | 0.0 | transcription factor bHLH128-like isoform X1 | ||||
Refseq | XP_024385118.1 | 0.0 | transcription factor bHLH128-like isoform X1 | ||||
Refseq | XP_024385119.1 | 0.0 | transcription factor bHLH128-like isoform X1 | ||||
TrEMBL | A0A2K1K1T7 | 0.0 | A0A2K1K1T7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S213_60V6.2 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 1e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_3300V3.1.p |
Entrez Gene | 5940187 |
Publications ? help Back to Top | |||
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