PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_23930V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 18939.5 Da PI: 6.9849 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.1 | 1.8e-44 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+C++dCv+apyfp ++p+kfanvhk+FGa+nv k+l++lp e r da+ss+vyeA+ar+rdPvyG+vg i++lqqq+++l++ Pp3c9_23930V3.2.p 8 PCAACKLLRRRCTRDCVFAPYFPPDEPQKFANVHKVFGAANVNKMLQELPVEARGDAVSSMVYEADARVRDPVYGCVGAISSLQQQVAHLQT 99 7******************************************************************************************* PP DUF260 93 elallkee 100 +la++++e Pp3c9_23930V3.2.p 100 QLAVANAE 107 ***99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.869 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-44 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MAGSGMSPCA ACKLLRRRCT RDCVFAPYFP PDEPQKFANV HKVFGAANVN KMLQELPVEA 60 RGDAVSSMVY EADARVRDPV YGCVGAISSL QQQVAHLQTQ LAVANAEIVC MRIHNTESSS 120 DCGTPHHMQG SYQQGLSPPL QPQSPELHHY HKPTAYYHRM DNSELAELLW T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-48 | 3 | 109 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-48 | 3 | 109 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024384061.1 | 1e-127 | LOB domain-containing protein 4-like | ||||
Refseq | XP_024384062.1 | 1e-127 | LOB domain-containing protein 4-like | ||||
Refseq | XP_024384063.1 | 1e-127 | LOB domain-containing protein 4-like | ||||
Refseq | XP_024384064.1 | 1e-127 | LOB domain-containing protein 4-like | ||||
Swissprot | Q8LBW3 | 7e-60 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A2K1K4B4 | 1e-126 | A0A2K1K4B4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S238_53V6.1 | 1e-127 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-62 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_23930V3.2.p |
Publications ? help Back to Top | |||
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