PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Expression |

Publication

Basic Information? help Back to Top

TF ID

Pp3c9_23930V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

LBD

Protein Properties

Length: 172aa MW: 18939.5 Da PI: 6.9849

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_23930V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.1	1.8e-44	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+C++dCv+apyfp ++p+kfanvhk+FGa+nv k+l++lp e r da+ss+vyeA+ar+rdPvyG+vg i++lqqq+++l++ Pp3c9_23930V3.2.p 8 PCAACKLLRRRCTRDCVFAPYFPPDEPQKFANVHKVFGAANVNKMLQELPVEARGDAVSSMVYEADARVRDPVYGCVGAISSLQQQVAHLQT 99 7***************************************************************************************** PP DUF260 93 elallkee 100 +la++++e Pp3c9_23930V3.2.p 100 QLAVANAE 107 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.869	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-44	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MAGSGMSPCA ACKLLRRRCT RDCVFAPYFP PDEPQKFANV HKVFGAANVN KMLQELPVEA 60 RGDAVSSMVY EADARVRDPV YGCVGAISSL QQQVAHLQTQ LAVANAEIVC MRIHNTESSS 120 DCGTPHHMQG SYQQGLSPPL QPQSPELHHY HKPTAYYHRM DNSELAELLW T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-48	3	109	7	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-48	3	109	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024384061.1	1e-127	LOB domain-containing protein 4-like
Refseq	XP_024384062.1	1e-127	LOB domain-containing protein 4-like
Refseq	XP_024384063.1	1e-127	LOB domain-containing protein 4-like
Refseq	XP_024384064.1	1e-127	LOB domain-containing protein 4-like
Swissprot	Q8LBW3	7e-60	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2K1K4B4	1e-126	A0A2K1K4B4_PHYPA; Uncharacterized protein
STRING	PP1S238_53V6.1	1e-127	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-62	LBD family protein

Link Out ? help Back to Top
Phytozome	Pp3c9_23930V3.2.p

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]