PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_22290V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 366aa MW: 39785.2 Da PI: 8.8048 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 88.2 | 1.1e-27 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C +C+vlr++C++ C+l+ ++ +++q +++ +v+k+FG++ ++ +++a++e+er+++++sl+yeA+ r+ +Pv Gavg+++ +++q Pp3c9_22290V3.4.p 2 SCDGCRVLRKGCSDTCILRHCLqwiesADAQGHATVFVAKFFGRAGLMGFISAVHETERPALFQSLLYEACGRTVNPVFGAVGLLSGGNWQA 93 6*********************9998666778************************************************************ PP DUF260 88 eqlkaelall 97 +q+++e++l Pp3c9_22290V3.4.p 94 CQTAVETVLK 103 ****998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.795 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.2E-23 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MSCDGCRVLR KGCSDTCILR HCLQWIESAD AQGHATVFVA KFFGRAGLMG FISAVHETER 60 PALFQSLLYE ACGRTVNPVF GAVGLLSGGN WQACQTAVET VLKGGTLRPP STTSLSSCLP 120 ANQSSNKVLF PAFNAFPKFT TPLPVRGDDD AQGASTPPSR SVTEPVPERE NNGLGVASSL 180 PRSRDLEKYV DGGLDAAMKG WHEESVRRQN VNQMLSWPSG INYSRDIKNH TPKDLYERRM 240 FKPKELGFLD LYGTHAVCPS PRRVKARVDF SLVNPSGLQE AAREHLITTP RADQLELDLT 300 LTVKGAKAGQ IVGSKRVSSP SESVNSEGSV TTLDSTPRHH SRISAWTTKM DHVTPPFSKL 360 LPLLQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.16838 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024384915.1 | 0.0 | LOB domain-containing protein 41-like | ||||
Refseq | XP_024384916.1 | 0.0 | LOB domain-containing protein 41-like | ||||
Refseq | XP_024384917.1 | 0.0 | LOB domain-containing protein 41-like | ||||
TrEMBL | A0A2K1K483 | 0.0 | A0A2K1K483_PHYPA; Uncharacterized protein | ||||
STRING | PP1S203_51V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-58 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_22290V3.4.p |