PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_22290V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LBD
Protein Properties Length: 366aa    MW: 39785.2 Da    PI: 8.8048
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_22290V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.21.1e-272103197
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C +C+vlr++C++ C+l+ ++     +++q +++ +v+k+FG++ ++ +++a++e+er+++++sl+yeA+ r+ +Pv Gavg+++ +++q 
  Pp3c9_22290V3.1.p   2 SCDGCRVLRKGCSDTCILRHCLqwiesADAQGHATVFVAKFFGRAGLMGFISAVHETERPALFQSLLYEACGRTVNPVFGAVGLLSGGNWQA 93 
                        6*********************9998666778************************************************************ PP

             DUF260  88 eqlkaelall 97 
                        +q+++e++l 
  Pp3c9_22290V3.1.p  94 CQTAVETVLK 103
                        ****998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.7951107IPR004883Lateral organ boundaries, LOB
PfamPF031957.2E-232101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSCDGCRVLR KGCSDTCILR HCLQWIESAD AQGHATVFVA KFFGRAGLMG FISAVHETER  60
PALFQSLLYE ACGRTVNPVF GAVGLLSGGN WQACQTAVET VLKGGTLRPP STTSLSSCLP  120
ANQSSNKVLF PAFNAFPKFT TPLPVRGDDD AQGASTPPSR SVTEPVPERE NNGLGVASSL  180
PRSRDLEKYV DGGLDAAMKG WHEESVRRQN VNQMLSWPSG INYSRDIKNH TPKDLYERRM  240
FKPKELGFLD LYGTHAVCPS PRRVKARVDF SLVNPSGLQE AAREHLITTP RADQLELDLT  300
LTVKGAKAGQ IVGSKRVSSP SESVNSEGSV TTLDSTPRHH SRISAWTTKM DHVTPPFSKL  360
LPLLQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.168380.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024384915.10.0LOB domain-containing protein 41-like
RefseqXP_024384916.10.0LOB domain-containing protein 41-like
RefseqXP_024384917.10.0LOB domain-containing protein 41-like
TrEMBLA0A2K1K4830.0A0A2K1K483_PHYPA; Uncharacterized protein
STRINGPP1S203_51V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-58LOB domain-containing protein 37