PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_21470V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 359aa MW: 39057.9 Da PI: 8.3963 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.8 | 9.1e-14 | 43 | 125 | 13 | 99 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + ++ +p +f++++ k+ ++ lt+e +s +W+v + + + + l+ GW +Fvk+++L+ gD ++F+l+ +s f v +f++ Pp3c9_21470V3.2.p 43 TECMPIPSSFVKANI--KTLGTSLTIEGPSTDKWTVAVEGSFAKHNISLRLGWVNFVKDHHLQLGDQLLFTLKTDSYF--QVEIFDE 125 55699******9985..568899***************5555555599************************988888..9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.858 | 31 | 126 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-5 | 35 | 126 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.71E-18 | 41 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.2E-11 | 42 | 125 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.81E-16 | 42 | 124 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-16 | 44 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MKKQACADCL AHCERVHGRG GETSDAIPFL SPSFLRRIGL DSTECMPIPS SFVKANIKTL 60 GTSLTIEGPS TDKWTVAVEG SFAKHNISLR LGWVNFVKDH HLQLGDQLLF TLKTDSYFQV 120 EIFDESGCKK LSALDAVNSL KPIDSNVSNQ EPNRITSEFE AKPVDLEPDK MSRKAHGAGG 180 SNRFQDASPP ARLSGRKQRG RSEVGKENTS SKKACIDPDS PESEGGNPIA AGDDDEVLKQ 240 RGSRKVSRGK SRKSQDFYED VDEEDFTLFH KPRARNTPAR NYKASSSTAE ANGQDVKKSS 300 SAAKEKQKAS VLCSVAAYSS VVKPRVALLH EKVGHGMMRC QFVIDGSLDD PAKVLEVS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.9280 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024383740.1 | 0.0 | B3 domain-containing protein Os03g0622100-like | ||||
TrEMBL | A0A2K1K450 | 0.0 | A0A2K1K450_PHYPA; Uncharacterized protein (Fragment) | ||||
STRING | PP1S316_8V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_21470V3.2.p |