PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_21470V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 359aa    MW: 39057.9 Da    PI: 8.3963
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_21470V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.89.1e-14431251399
                        TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        + ++ +p +f++++   k+ ++ lt+e +s  +W+v +  +  +  + l+ GW +Fvk+++L+ gD ++F+l+ +s f   v +f++
  Pp3c9_21470V3.2.p  43 TECMPIPSSFVKANI--KTLGTSLTIEGPSTDKWTVAVEGSFAKHNISLRLGWVNFVKDHHLQLGDQLLFTLKTDSYF--QVEIFDE 125
                        55699******9985..568899***************5555555599************************988888..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.85831126IPR003340B3 DNA binding domain
SMARTSM010192.7E-535126IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-1841128IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-1142125IPR003340B3 DNA binding domain
CDDcd100173.81E-1642124No hitNo description
Gene3DG3DSA:2.40.330.101.4E-1644128IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MKKQACADCL AHCERVHGRG GETSDAIPFL SPSFLRRIGL DSTECMPIPS SFVKANIKTL  60
GTSLTIEGPS TDKWTVAVEG SFAKHNISLR LGWVNFVKDH HLQLGDQLLF TLKTDSYFQV  120
EIFDESGCKK LSALDAVNSL KPIDSNVSNQ EPNRITSEFE AKPVDLEPDK MSRKAHGAGG  180
SNRFQDASPP ARLSGRKQRG RSEVGKENTS SKKACIDPDS PESEGGNPIA AGDDDEVLKQ  240
RGSRKVSRGK SRKSQDFYED VDEEDFTLFH KPRARNTPAR NYKASSSTAE ANGQDVKKSS  300
SAAKEKQKAS VLCSVAAYSS VVKPRVALLH EKVGHGMMRC QFVIDGSLDD PAKVLEVS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.92800.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383740.10.0B3 domain-containing protein Os03g0622100-like
TrEMBLA0A2K1K4500.0A0A2K1K450_PHYPA; Uncharacterized protein (Fragment)
STRINGPP1S316_8V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-10B3 family protein