PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_20090V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 650aa    MW: 69885 Da    PI: 6.5107
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_20090V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.71e-13334428294
                        EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        +k+lt  dv+++gr++lpk+ a e+    ++++e+k lt+ed  s++ W++++++  ++ks++yvl+  + eFvk  +Lke+D ++ +  ++
  Pp3c9_20090V3.3.p 334 KKELTVTDVGELGRIILPKRDA-ECqlpHLDSKEGKLLTMEDyNSNKHWTLRYKWwpNNKSRMYVLE-STGEFVKYYDLKEKDELIVY--KD 421
                        5888999***************.5559966777899******8888*********99999999**99.9**************99999..44 PP

                        SEE..EE CS
                 B3  88 sefelvv 94 
                          ++lv+
  Pp3c9_20090V3.3.p 422 GHGKLVI 428
                        5665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-19329429IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-15331429No hitNo description
SuperFamilySSF1019368.83E-16332427IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.6E-7333434IPR003340B3 DNA binding domain
PfamPF023621.8E-9335428IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MRLATMDVVG GVIVAAQSSK TGSSGESRGR LSGIKRSCGC RGGRDHCGKD TASSLTEQAA  60
PVWRSLRSAG ESPFEGWKST TTTTATTTAK SNLQRWGMVV ESKGGGVERV ADDECNNDLC  120
NALSCAASEG GSFGGSEHGL RNGVILGGLR ESTEVKIESL STGIMNFEPE SVNSAPSVSD  180
GGLFFWASAP CTYGSCLLKS PDPYLISTTV ATDPFSGVCH GSSPEAERDR QIAFTFDDSS  240
LSLGPRIMTT ERSEGEPPPK RATRSSLQIG SLNLREQDVE ASSASRLVRS TSAFGDGFSQ  300
ESSGALMAPL FRSNSSMFPK PARSWADPLR FLLKKELTVT DVGELGRIIL PKRDAECQLP  360
HLDSKEGKLL TMEDYNSNKH WTLRYKWWPN NKSRMYVLES TGEFVKYYDL KEKDELIVYK  420
DGHGKLVIRG QKWSSSAILR TDSFLGPSGF KSKSTGKRSP KGGNVRSNIC KGSPTASSSN  480
SSAQPSNNYQ ALDSPHEHES ADVLDFKLGP ATSLVTNHIM ATQQASQRTT TRTPSPPYND  540
GGLTKLHHLD VPTSSPVANM HPKISLNTLD CGMLPGSVHP TSASSSLHYH VEPSEIAPIG  600
NYGAVAVHSD GAIDWEKLPD PPGNLIEFPD PPAIEFPIDE FECSWAEFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A6e-283294219101B3 domain-containing transcription factor LEC2
6j9c_D6e-283294219101B3 domain-containing transcription factor LEC2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385618.10.0uncharacterized protein LOC112287129 isoform X2
TrEMBLA0A2K1K3Y10.0A0A2K1K3Y1_PHYPA; Uncharacterized protein
STRINGPP1S314_2V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-31B3 family protein