PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_20090V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 650aa MW: 69885 Da PI: 6.5107 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.7 | 1e-13 | 334 | 428 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +k+lt dv+++gr++lpk+ a e+ ++++e+k lt+ed s++ W++++++ ++ks++yvl+ + eFvk +Lke+D ++ + ++ Pp3c9_20090V3.2.p 334 KKELTVTDVGELGRIILPKRDA-ECqlpHLDSKEGKLLTMEDyNSNKHWTLRYKWwpNNKSRMYVLE-STGEFVKYYDLKEKDELIVY--KD 421 5888999***************.5559966777899******8888*********99999999**99.9**************99999..44 PP SEE..EE CS B3 88 sefelvv 94 ++lv+ Pp3c9_20090V3.2.p 422 GHGKLVI 428 5665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-19 | 329 | 429 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.61E-15 | 331 | 429 | No hit | No description |
SuperFamily | SSF101936 | 8.83E-16 | 332 | 427 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 8.6E-7 | 333 | 434 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-9 | 335 | 428 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 650 aa Download sequence Send to blast |
MRLATMDVVG GVIVAAQSSK TGSSGESRGR LSGIKRSCGC RGGRDHCGKD TASSLTEQAA 60 PVWRSLRSAG ESPFEGWKST TTTTATTTAK SNLQRWGMVV ESKGGGVERV ADDECNNDLC 120 NALSCAASEG GSFGGSEHGL RNGVILGGLR ESTEVKIESL STGIMNFEPE SVNSAPSVSD 180 GGLFFWASAP CTYGSCLLKS PDPYLISTTV ATDPFSGVCH GSSPEAERDR QIAFTFDDSS 240 LSLGPRIMTT ERSEGEPPPK RATRSSLQIG SLNLREQDVE ASSASRLVRS TSAFGDGFSQ 300 ESSGALMAPL FRSNSSMFPK PARSWADPLR FLLKKELTVT DVGELGRIIL PKRDAECQLP 360 HLDSKEGKLL TMEDYNSNKH WTLRYKWWPN NKSRMYVLES TGEFVKYYDL KEKDELIVYK 420 DGHGKLVIRG QKWSSSAILR TDSFLGPSGF KSKSTGKRSP KGGNVRSNIC KGSPTASSSN 480 SSAQPSNNYQ ALDSPHEHES ADVLDFKLGP ATSLVTNHIM ATQQASQRTT TRTPSPPYND 540 GGLTKLHHLD VPTSSPVANM HPKISLNTLD CGMLPGSVHP TSASSSLHYH VEPSEIAPIG 600 NYGAVAVHSD GAIDWEKLPD PPGNLIEFPD PPAIEFPIDE FECSWAEFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 6e-28 | 329 | 421 | 9 | 101 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 6e-28 | 329 | 421 | 9 | 101 | B3 domain-containing transcription factor LEC2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385618.1 | 0.0 | uncharacterized protein LOC112287129 isoform X2 | ||||
TrEMBL | A0A2K1K3Y1 | 0.0 | A0A2K1K3Y1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S314_2V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 3e-31 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_20090V3.2.p |