PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_1880V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 518aa    MW: 57751.6 Da    PI: 5.5691
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_1880V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.6e-11291333855
                       HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        Er+RR+++N+++ +Lr+l+Pk +      K++Ka+i+   + Y+k+Lq
  Pp3c9_1880V3.3.p 291 SERKRRKKLNDGLYTLRSLVPKiS------KMDKASIVGDSIVYVKELQ 333
                       6*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.589283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-16288352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-15289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-17290350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.82E-11290337No hitNo description
PfamPF000101.3E-8291333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.89E-7439514No hitNo description
Gene3DG3DSA:3.30.70.2601.2E-5440516No hitNo description
PROSITE profilePS5167110.876443517IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MERGKRLHVK HLDPDTMDTR TGRTDTFPMP VTNIDVYNRS GQVIEAGSKS YAPSTDKITM  60
QSEVLFQPAQ RFDSRTDSEF LRKLKENPRA ELKRGSSERF HLSNAEMDDV KRKYGWNDTK  120
DSLELIYPDQ YHPVMNDKKP SSIKESQDLG IQDWLPECGE LPDRKLSRPY SMARKYDDAS  180
AARSSMHGSQ YLAQLAEAHK FSLEPASESN NLAEWVDIPD VKQKLLRSES EPSYALVSPS  240
EKQTQSCDME QQLRRAGSIS SEEFVEFEVP PGRGRRHNNN TSGLASKNLV SERKRRKKLN  300
DGLYTLRSLV PKISKMDKAS IVGDSIVYVK ELQQQIQSME SEIAEMEENL LSSTGVAAEC  360
SGGSRDSTSL ESKEPAAGSS SSCEKGTEEA MLGVELNDNT VLAASEKTSS SADSQGPSQE  420
HSPVVQRKII NMEVAKMEDK TYQLRATCQK GPGILVQLTR ALESLDVDIL TAHHTSFQEN  480
MLDTFIVEMR SLDVKEAEHV RKALLDAVAQ HGLAVQV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291298ERKRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.119400.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385081.10.0uncharacterized protein LOC112286915 isoform X3
TrEMBLA0A2K1K1M00.0A0A2K1K1M0_PHYPA; Uncharacterized protein
STRINGPP1S90_171V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-28bHLH family protein