PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_1880V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 502aa    MW: 55837.4 Da    PI: 5.2403
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_1880V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.3e-11275317855
                       HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        Er+RR+++N+++ +Lr+l+Pk +      K++Ka+i+   + Y+k+Lq
  Pp3c9_1880V3.2.p 275 SERKRRKKLNDGLYTLRSLVPKiS------KMDKASIVGDSIVYVKELQ 317
                       6*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.589267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-16272336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-15273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-17274334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.24E-11274321No hitNo description
PfamPF000101.2E-8275317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.71E-7423498No hitNo description
Gene3DG3DSA:3.30.70.2601.2E-5424500No hitNo description
PROSITE profilePS5167110.876427501IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MDTRTGRTDT FPMPVTNIDV YNRSGQVIEA GSKSYAPSTD KITMQSEVLF QPAQRFDSRT  60
DSEFLRKLKE NPRAELKRGS SERFHLSNAE MDDVKRKYGW NDTKDSLELI YPDQYHPVMN  120
DKKPSSIKES QDLGIQDWLP ECGELPDRKL SRPYSMARKY DDASAARSSM HGSQYLAQLA  180
EAHKFSLEPA SESNNLAEWV DIPDVKQKLL RSESEPSYAL VSPSEKQTQS CDMEQQLRRA  240
GSISSEEFVE FEVPPGRGRR HNNNTSGLAS KNLVSERKRR KKLNDGLYTL RSLVPKISKM  300
DKASIVGDSI VYVKELQQQI QSMESEIAEM EENLLSSTGV AAECSGGSRD STSLESKEPA  360
AGSSSSCEKG TEEAMLGVEL NDNTVLAASE KTSSSADSQG PSQEHSPVVQ RKIINMEVAK  420
MEDKTYQLRA TCQKGPGILV QLTRALESLD VDILTAHHTS FQENMLDTFI VEMRSLDVKE  480
AEHVRKALLD AVAQHGLAVQ V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275282ERKRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.119400.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385082.10.0uncharacterized protein LOC112286915 isoform X4
TrEMBLA0A2K1K1M00.0A0A2K1K1M0_PHYPA; Uncharacterized protein
STRINGPP1S90_171V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-28bHLH family protein