PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_18370V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 303aa    MW: 33474 Da    PI: 6.3071
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_18370V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-052446223
                       EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                       +Cp C k Fs+ +nL+rH+ + +
  Pp3c9_18370V3.4.p 24 RCPACFKQFSTDENLVRHLEKaC 46
                       7******************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.3652352IPR007087Zinc finger, C2H2
PROSITE patternPS0002802547IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.420.108.0E-10153200IPR012337Ribonuclease H-like domain
SuperFamilySSF530987.59E-9154255IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.108.4E-11201264IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MASEPVTKAG GASSGGNTEI PRIRCPACFK QFSTDENLVR HLEKACHTEH EPQCGVCHKH  60
CFCFEALREH LLGRLAKKEC AAEFSRRGCS LCLDVLESEE ALTNHRLKCQ FMSACPSGKV  120
LTTPMEQSIK GAIDAPEGSA EAAHFSEERQ YGAVALDCEM VGGGSDGSIN ICARVCLVDE  180
DENVLLNTYV QPLLPVTDYR DTATYQLFVK TSGVSHKLRF LTEVFLGYKI QDGTIHDPCE  240
DAIAAMRLYK RMRSRRHAGA LVHVCDLSQL SLQHVDAPQW SYSSVYSYSE PSFYCWCVDS  300
KT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254KRMRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.181771e-177gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024384667.10.0RNA exonuclease 4-like
TrEMBLA0A2K1K3Q20.0A0A2K1K3Q2_PHYPA; Uncharacterized protein
STRINGPP1S89_218V6.10.0(Physcomitrella patens)