PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_15270V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 433aa    MW: 47791.6 Da    PI: 9.0541
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_15270V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-05206230123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        y+C    C k+F+++ +++ H +tH
  Pp3c9_15270V3.1.p 206 YQCAfaGCQKTFKNPQTMRMHHKTH 230
                        99**********************9 PP
2zf-C2H212.80.00037262280220
                        EETTTTEEESSHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                        +Cp C k+F   ++L+rH 
  Pp3c9_15270V3.1.p 262 RCPTCYKTFVGLYELRRHF 280
                        7*****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-6202231No hitNo description
Gene3DG3DSA:3.30.160.609.6E-9204233IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.658206235IPR007087Zinc finger, C2H2
SMARTSM003550.0021206230IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280208230IPR007087Zinc finger, C2H2
SMARTSM003553.1261284IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.56E-5261311No hitNo description
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
SMARTSM0035587291311IPR015880Zinc finger, C2H2-like
SMARTSM0035594317338IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MPDVSMVQQG LNYPATPEWP LYEKTSFLPL LDNVAMTSQS LAGTSTPPFG ITRLSRSQSQ  60
VLQFLDSGTV FDPPSTPSHE RAPLLDLHPT KLNSPSPINT PVMHPNLVCT LKSILSPKLE  120
FNGQTTSGDC GFTQYSGYSQ VIEMAELQGS EHGNSLGADY PGKSSPEITF RPSNNNNLKQ  180
MPDNANFLQQ KAILVPVDLI QNRRPYQCAF AGCQKTFKNP QTMRMHHKTH FSDAAAAQLG  240
AEAVLTATAP LKAGHNKKIP SRCPTCYKTF VGLYELRRHF GRKHSEGEKS HACRKCGKRF  300
HIEVDVRDHE KLCGEPIVCS CGMKFAFKCN LVAHRRSHPK CQDRPVAAET EKRLARKPLN  360
SEESTRGLSD MPVQNFSVVT RIAAEMASAR PQLPQIGSEN GYSPFRLIKV PYVGTSVQSS  420
SYFRPCIDVL MA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024384181.10.0protein TRANSPARENT TESTA 1-like isoform X2
TrEMBLA0A2K1K3A60.0A0A2K1K3A6_PHYPA; Uncharacterized protein
STRINGPP1S78_222V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-11indeterminate(ID)-domain 2