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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_15250V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LFY | ||||||||
Protein Properties | Length: 312aa MW: 34604.2 Da PI: 7.144 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 41 | 3.2e-13 | 138 | 208 | 48 | 121 |
FLO_LFY 48 lreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrle 121 +l+ +f ++G+r tv+ki+e+Gft++tL+ +el l++s+ + l +Ge +Gik a + +r + Pp3c9_15250V3.3.p 138 SVDLDTFFDGFGLRPETVVKIKEMGFTAKTLMSNL-DELPSLLESINQH--HPLTLGEEWGIKGAAKKWQREQT 208 4489***************************9866.5899999999985..57889*******99876555433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 1.0E-7 | 140 | 203 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MVKVKGVEWN HVIVLKEPEK HGMATLVRCI HCDKEFQGNA MRIRAHLLGN KRQAGVTGCP 60 TVPDDAREEL RLIEIAREQT QKKRKPVKMR GVRGTSSASD HSSGSADHFD GKGGLGRKAE 120 RISLQHELLA RMGSIMASVD LDTFFDGFGL RPETVVKIKE MGFTAKTLMS NLDELPSLLE 180 SINQHHPLTL GEEWGIKGAA KKWQREQTFL AHPEDEKWPD SEDTCKEVAC IDTEEVTQLE 240 PYPKWIPQQQ QGQQLQSPHN HLAPPNLSVS NLSPPNQGVT DFFSGWSRWV SGKGGVLYES 300 SGIPSSGERS L* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.10845 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024384641.1 | 0.0 | uncharacterized protein LOC112286713 isoform X2 | ||||
TrEMBL | A9SH89 | 0.0 | A9SH89_PHYPA; Predicted protein | ||||
STRING | PP1S78_224V6.1 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_15250V3.3.p |