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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_15250V3.1.p | ||||||||
Common Name | PHYPADRAFT_233441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LFY | ||||||||
Protein Properties | Length: 337aa MW: 37367.2 Da PI: 7.2137 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 41 | 3.2e-13 | 137 | 208 | 47 | 121 |
FLO_LFY 47 klreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrle 121 + +l+ +f ++G+r tv+ki+e+Gft++tL+ +el l++s+ + l +Ge +Gik a + +r + Pp3c9_15250V3.1.p 137 ASVDLDTFFDGFGLRPETVVKIKEMGFTAKTLMSNL-DELPSLLESINQH--HPLTLGEEWGIKGAAKKWQREQT 208 24489***************************9866.5899999999985..57889*******99876554433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 1.1E-7 | 140 | 203 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MVKVKGVEWN HVIVLKEPEK HGMATLVRCI HCDKEFQGNA MRIRAHLLGN KRQAGVTGCP 60 TVPDDAREEL RLIEIAREQT QKKRKPVKMR GVRGTSSASD HSSGSADHFD GKGGLGRKAE 120 RISLQHELLA RMGSIMASVD LDTFFDGFGL RPETVVKIKE MGFTAKTLMS NLDELPSLLE 180 SINQHHPLTL GEEWGIKGAA KKWQREQTFL AHPEDEKWPD SEDTCKEVAC IDTEEVTQLE 240 PYPKWIPQQQ QGQQLQSPHN HLAPPNLSVS NLSPPNQGVT DAGPGGSPGR VGYYTNLLAY 300 QAQGNARFEI MREVDVTSQR QPQVKHSFDH GAATTF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.10845 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024384640.1 | 0.0 | uncharacterized protein LOC112286713 isoform X1 | ||||
TrEMBL | A0A2K1K3A9 | 0.0 | A0A2K1K3A9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S78_224V6.1 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_15250V3.1.p |
Entrez Gene | 5928910 |
Publications ? help Back to Top | |||
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