PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_14080V3.3.p | ||||||||
Common Name | PHYPADRAFT_70654 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 353aa MW: 40366.1 Da PI: 8.4749 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.8 | 2.3e-12 | 261 | 300 | 3 | 48 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 + GVr+ ++g+Wv+eIr++s+ +++++lg+f+t e+Aa++a Pp3c9_14080V3.3.p 261 FIGVRR--RNGKWVSEIRVFSS---SRKVWLGSFDT-EKAAALAFD 300 789*84..47*********854...4**********.999999965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.355 | 251 | 316 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-5 | 260 | 299 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-6 | 260 | 322 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.06E-13 | 260 | 318 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.1E-17 | 261 | 318 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-11 | 261 | 318 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MTGKKPCQWG MLVRQSHAVG RFKDRLRRLR DRDFMRFCEK FFCTSGASDS AHRHHSTEGS 60 STPTQFYDSQ TLGDWQALYE SCEPGLPRFQ RNLDGAQDED ETPLLHRTDS DYSMLLDSAS 120 CSVPQHPHGL PLPTSNREDR DLYSSDSFNP LPSSKGSADE CDDMISELCY DSKGLQLNSS 180 AMAEGIRDVG GFSSTLALYA WAVENCVIDE EEEHDQSTGR RGWHIMKRIF SACKWMSRMR 240 RFRRRARART RYRSADHSER FIGVRRRNGK WVSEIRVFSS SRKVWLGSFD TEKAAALAFD 300 AGKYHSSTRY DKFNFPDSPQ LLGPKKDLHL LPPEKIKTEL KKVAKDFAEG NY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 242 | 252 | RRRARARTRYR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.1830 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024384574.1 | 0.0 | uncharacterized protein LOC112286679 | ||||
Refseq | XP_024384575.1 | 0.0 | uncharacterized protein LOC112286679 | ||||
TrEMBL | A0A2K1K360 | 0.0 | A0A2K1K360_PHYPA; Uncharacterized protein | ||||
TrEMBL | A9RUB1 | 0.0 | A9RUB1_PHYPA; Predicted protein | ||||
STRING | PP1S29_45V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 4e-16 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_14080V3.3.p |
Entrez Gene | 5920921 |
Publications ? help Back to Top | |||
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