PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Expression |

Regulation |

Basic Information? help Back to Top

TF ID

Pp3c9_11130V3.7.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

CPP

Protein Properties

Length: 1176aa MW: 126800 Da PI: 6.3603

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_11130V3.7.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	45.5	1.5e-14	700	738	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YCeCfaa+ +C +C C +C+Nk e Pp3c9_11130V3.7.p 700 CKRCNCKKSKCLKLYCECFAARLFCVGSCACRNCFNKPE 738 79**********************************976 PP
2	TCR	50.9	3e-16	784	822	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ag+ Cse C+Ce+CkN Pp3c9_11130V3.7.p 784 RHKRGCNCKKSLCLKKYCECYQAGVGCSEGCRCEGCKNM 822 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	4.8E-14	698	739	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	34.95	699	824	IPR005172	CRC domain
Pfam	PF03638	3.5E-10	701	736	IPR005172	CRC domain
SMART	SM01114	1.6E-18	784	825	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	8.9E-12	786	822	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 1176 aa Download sequence Send to blast
MRQVKMLTRG SKTAAEEVVR RFESCADLAS PDKRESIPLV TDVQDSPVFT FLCDLSPIQS 60 AKSVHQVQTY NELMFPPEPR FFASPYSVRR SSSRALKRVV AAERFSVQAQ AEGQENLIWQ 120 SGISRNTLSD NSISPSPLSR RSDDHHVTLC SSGPPEEVPA SQPNSANLVD EGTLASNSMQ 180 LNSEPTSCNI NETVATTTTS LQTQFTDYHQ PAPAVSAAMP SEMVSCIDYA GENTGGTNTE 240 HIEVAEGRLS FSSVMSQAND CVLSGIASQE SPPIHDNQNH VTMISSSHNE DFGLNCNPIA 300 KGSPELDQDT TAMAYFLAGN RGPGQESGDD EWSEDPNEVD VSRLPLQPTS GHAENQSDMT 360 NGGSGKQDSQ ANTSKQRGFR RRCLDFDVAR RKSFGITSGR EFLDSRLKDC SGTDGNKTSS 420 VLSDVGAANL DATTSEVQAV GDDSALDHDP SRTVVAFGAG NPACEDTLGA ATTVQQLTSS 480 CYQNKVDIAH AKTGESHAWK SHNSGVTGGI NSPEGVRRSP RVHKTGIGLH LNSLTSSMSF 540 KRDPPSTGGE SSKEVLATVL GLQPLASSPR GDLVSAGFPA ILNQNYTPRA GSLSKRTEME 600 TAKADTLFPC NNTVYVLTPD STRLDIDNFG VSSVESLPLT SVVSPRGRKR SRPDEQDLVW 660 QREGEVDDEL LDSPQSCKNR RLSRRKSPRS HQAEKPGDGC KRCNCKKSKC LKLYCECFAA 720 RLFCVGSCAC RNCFNKPEYE ATVLNTRQQI EARDPLAFAP KIVQAAEPTP IPRDDALDTP 780 ASARHKRGCN CKKSLCLKKY CECYQAGVGC SEGCRCEGCK NMYGRKEGPE EGEGKVVEHA 840 HSASETSQAE VTTELFKSTS GGTDQLCDDE KSNLPPITPT FARGWLGGSM LRLSSSGRKR 900 ASSDEHFASL SAQPLSRPPN SPTIFSNTLD SFDLAPYPQG DTDFSMNDVD DSPTTTPTFS 960 RSGHASSRWE GLSDFYPLTP LPLTTLQQTP DSSCVTIERS GTSPALVIQM SDSSHRTTSA 1020 TSAQHHLSAR NWSPRTPGFR QPALPTPFSF DMPHQAQLSS TDQLHSPLTS TTYPGKNLQS 1080 EVGSVTAAPY DDDDSTPDSL KHADIFGSLT RRTLTKSSSP KQKRVTPPQY SSREQASFGG 1140 GRGNPLATPP GLRNSKKFIL QALPPLPSAS PLSKG*

Sequence ? help Back to Top

Protein Sequence Length: 1176 aa Download sequence Send to blast

MRQVKMLTRG SKTAAEEVVR RFESCADLAS PDKRESIPLV TDVQDSPVFT FLCDLSPIQS  60
AKSVHQVQTY NELMFPPEPR FFASPYSVRR SSSRALKRVV AAERFSVQAQ AEGQENLIWQ  120
SGISRNTLSD NSISPSPLSR RSDDHHVTLC SSGPPEEVPA SQPNSANLVD EGTLASNSMQ  180
LNSEPTSCNI NETVATTTTS LQTQFTDYHQ PAPAVSAAMP SEMVSCIDYA GENTGGTNTE  240
HIEVAEGRLS FSSVMSQAND CVLSGIASQE SPPIHDNQNH VTMISSSHNE DFGLNCNPIA  300
KGSPELDQDT TAMAYFLAGN RGPGQESGDD EWSEDPNEVD VSRLPLQPTS GHAENQSDMT  360
NGGSGKQDSQ ANTSKQRGFR RRCLDFDVAR RKSFGITSGR EFLDSRLKDC SGTDGNKTSS  420
VLSDVGAANL DATTSEVQAV GDDSALDHDP SRTVVAFGAG NPACEDTLGA ATTVQQLTSS  480
CYQNKVDIAH AKTGESHAWK SHNSGVTGGI NSPEGVRRSP RVHKTGIGLH LNSLTSSMSF  540
KRDPPSTGGE SSKEVLATVL GLQPLASSPR GDLVSAGFPA ILNQNYTPRA GSLSKRTEME  600
TAKADTLFPC NNTVYVLTPD STRLDIDNFG VSSVESLPLT SVVSPRGRKR SRPDEQDLVW  660
QREGEVDDEL LDSPQSCKNR RLSRRKSPRS HQAEKPGDGC KRCNCKKSKC LKLYCECFAA  720
RLFCVGSCAC RNCFNKPEYE ATVLNTRQQI EARDPLAFAP KIVQAAEPTP IPRDDALDTP  780
ASARHKRGCN CKKSLCLKKY CECYQAGVGC SEGCRCEGCK NMYGRKEGPE EGEGKVVEHA  840
HSASETSQAE VTTELFKSTS GGTDQLCDDE KSNLPPITPT FARGWLGGSM LRLSSSGRKR  900
ASSDEHFASL SAQPLSRPPN SPTIFSNTLD SFDLAPYPQG DTDFSMNDVD DSPTTTPTFS  960
RSGHASSRWE GLSDFYPLTP LPLTTLQQTP DSSCVTIERS GTSPALVIQM SDSSHRTTSA  1020
TSAQHHLSAR NWSPRTPGFR QPALPTPFSF DMPHQAQLSS TDQLHSPLTS TTYPGKNLQS  1080
EVGSVTAAPY DDDDSTPDSL KHADIFGSLT RRTLTKSSSP KQKRVTPPQY SSREQASFGG  1140
GRGNPLATPP GLRNSKKFIL QALPPLPSAS PLSKG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	5e-21	690	830	4	126	Protein lin-54 homolog
5fd3_B	5e-21	690	830	4	126	Protein lin-54 homolog
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.17945	1e-125	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024383709.1	0.0	uncharacterized protein LOC112286236 isoform X1
TrEMBL	A0A2K1K2U2	0.0	A0A2K1K2U2_PHYPA; Uncharacterized protein
STRING	PP1S29_305V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	3e-58	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Pp3c9_11130V3.7.p