PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_11130V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CPP
Protein Properties Length: 1053aa    MW: 113365 Da    PI: 6.569
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_11130V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.71.3e-14577615341
                TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                        +k+CnCkkskClk+YCeCfaa+ +C  +C C +C+Nk e
  Pp3c9_11130V3.5.p 577 CKRCNCKKSKCLKLYCECFAARLFCVGSCACRNCFNKPE 615
                        79**********************************976 PP
2TCR51.12.6e-16661699139
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        ++k+gCnCkks ClkkYCeC++ag+ Cse C+Ce+CkN 
  Pp3c9_11130V3.5.p 661 RHKRGCNCKKSLCLKKYCECYQAGVGCSEGCRCEGCKNM 699
                        589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.8E-14575616IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.95576701IPR005172CRC domain
PfamPF036383.0E-10578613IPR005172CRC domain
SMARTSM011141.6E-18661702IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.8E-12663699IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 1053 aa     Download sequence    Send to blast
MFPPEPRFFA SPYSVRRSSS RALKRVVAAE RFSVQAQAEG QENLIWQSGT LASNSMQLNS  60
EPTSCNINET VATTTTSLQT QFTDYHQPAP AVSAAMPSEM VSCIDYAGEN TGGTNTEHIE  120
VAEGRLSFSS VMSQANDCVL SGIASQESPP IHDNQNHVTM ISSSHNEDFG LNCNPIAKGS  180
PELDQDTTAM AYFLAGNRGP GQESGDDEWS EDPNEVDVSR LPLQPTSGHA ENQSDMTNGG  240
SGKQDSQANT SKQRGFRRRC LDFDVARRKS FGITSGREFL DSRLKDCSGT DGNKTSSVLS  300
DVGAANLDAT TSEVQAVGDD SALDHDPSRT VVAFGAGNPA CEDTLGAATT VQQLTSSCYQ  360
NKVDIAHAKT GESHAWKSHN SGVTGGINSP EGVRRSPRVH KTGIGLHLNS LTSSMSFKRD  420
PPSTGGESSK EVLATVLGLQ PLASSPRGDL VSAGFPAILN QNYTPRAGSL SKRTEMETAK  480
ADTLFPCNNT VYVLTPDSTR LDIDNFGVSS VESLPLTSVV SPRGRKRSRP DEQDLVWQRE  540
GEVDDELLDS PQSCKNRRLS RRKSPRSHQA EKPGDGCKRC NCKKSKCLKL YCECFAARLF  600
CVGSCACRNC FNKPEYEATV LNTRQQIEAR DPLAFAPKIV QAAEPTPIPR DDALDTPASA  660
RHKRGCNCKK SLCLKKYCEC YQAGVGCSEG CRCEGCKNMY GRKEGPEEGE GKVVEHAHSA  720
SETSQAEVTT ELFKSTSGGT DQLCDDEKSN LPPITPTFAR GWLGGSMLRL SSSGRKRASS  780
DEHFASLSAQ PLSRPPNSPT IFSNTLDSFD LAPYPQGDTD FSMNDVDDSP TTTPTFSRSG  840
HASSRWEGLS DFYPLTPLPL TTLQQTPDSS CVTIERSGTS PALVIQMSDS SHRTTSATSA  900
QHHLSARNWS PRTPGFRQPA LPTPFSFDMP HQAQLSSTDQ LHSPLTSTTY PGKNLQSEVG  960
SVTAAPYDDD DSTPDSLKHA DIFGSLTRRT LTKSSSPKQK RVTPPQYSSR EQASFGGGRG  1020
NPLATPPGLR NSKKFILQAL PPLPSASPLS KG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-215677074126Protein lin-54 homolog
5fd3_B7e-215677074126Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.179451e-125protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383710.10.0uncharacterized protein LOC112286236 isoform X2
TrEMBLA0A2K1K2U20.0A0A2K1K2U2_PHYPA; Uncharacterized protein
STRINGPP1S29_305V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.13e-58Tesmin/TSO1-like CXC domain-containing protein