PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c8_6080V3.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 526aa MW: 58810.2 Da PI: 4.4048 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.6 | 2.1e-52 | 5 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppG+rFhPtdeelv +yLk k++gk++e+ + i+ vd+yk+ePwdLp k v ++++ewyf+s rdkky++g r+nrat++gyWk+tgkd+ Pp3c8_6080V3.5.p 5 LPPGYRFHPTDEELVAYYLKYKINGKQIEM-NPIAVVDLYKCEPWDLPvKsGVGGNDQEWYFYSARDKKYPNGARTNRATQRGYWKSTGKDRV 96 79****************************.88***************5346666888**********************************9 PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v++ +g+kktLv+y+grap+ge+tdWvmheyr+ Pp3c8_6080V3.5.p 97 VKC--AISTGMKKTLVYYTGRAPRGERTDWVMHEYRM 131 998..7889**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-55 | 3 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.03 | 5 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-27 | 6 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MAQRLPPGYR FHPTDEELVA YYLKYKINGK QIEMNPIAVV DLYKCEPWDL PVKSGVGGND 60 QEWYFYSARD KKYPNGARTN RATQRGYWKS TGKDRVVKCA ISTGMKKTLV YYTGRAPRGE 120 RTDWVMHEYR MEDRVYENLR GPQEPYVLAR VFKKSGSGPK NGEQYGAPFI EEPSSPLSGN 180 GGETSEPYEQ PAVEYPLPLL KVEPGLSPQL ENYGNECESP YFNNMCMQEL EDLMFSESFD 240 TDVPRLANGD LDGVSIGSPT SVQDGFRWED LLPEQPQATT EDDTWKDLVI NNVDELLSGN 300 DRFIADGSLG MGTTQHVVHD TDDLLSGPGD YSGDGDFLEI KDLINLEDDI DVSGSNISVG 360 EYEGFDFSAS AIQLRPPRIV QWPMQFDPQG ETSRRMLLAC RPGSQPEQFS STLSAPRILH 420 TSASSRNLSD FADRAISSTG LHTSAEEGWS NDGDLVTLAR EGSGYVPDAD FGSNVEGCYD 480 ELRWREITPR DDVWNMETLH RRLQTTKLCP LQPKKSISKA ISEGV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-44 | 5 | 160 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-44 | 5 | 160 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-44 | 5 | 160 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-44 | 5 | 160 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-44 | 5 | 160 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-44 | 5 | 160 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-44 | 5 | 160 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-44 | 5 | 160 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-44 | 5 | 160 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-44 | 5 | 160 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-44 | 5 | 160 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-44 | 5 | 160 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-44 | 5 | 160 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-44 | 5 | 160 | 17 | 171 | NAC domain-containing protein 19 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.11235 | 0.0 | protonema |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024382443.1 | 0.0 | NAC domain-containing protein 45-like | ||||
TrEMBL | A0A2K1K6B0 | 0.0 | A0A2K1K6B0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S8_36V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 2e-71 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c8_6080V3.5.p |