PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_6080V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 494aa    MW: 54718.5 Da    PI: 4.3239
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_6080V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.71.9e-5251311128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppG+rFhPtdeelv +yLk k++gk++e+ + i+ vd+yk+ePwdLp k  v ++++ewyf+s rdkky++g r+nrat++gyWk+tgkd+ 
  Pp3c8_6080V3.3.p   5 LPPGYRFHPTDEELVAYYLKYKINGKQIEM-NPIAVVDLYKCEPWDLPvKsGVGGNDQEWYFYSARDKKYPNGARTNRATQRGYWKSTGKDRV 96 
                       79****************************.88***************5346666888**********************************9 PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v++     +g+kktLv+y+grap+ge+tdWvmheyr+
  Pp3c8_6080V3.3.p  97 VKC--AISTGMKKTLVYYTGRAPRGERTDWVMHEYRM 131
                       998..7889**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-553154IPR003441NAC domain
PROSITE profilePS5100555.035154IPR003441NAC domain
PfamPF023651.3E-276131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MAQRLPPGYR FHPTDEELVA YYLKYKINGK QIEMNPIAVV DLYKCEPWDL PVKSGVGGND  60
QEWYFYSARD KKYPNGARTN RATQRGYWKS TGKDRVVKCA ISTGMKKTLV YYTGRAPRGE  120
RTDWVMHEYR MEDRVYENLR GPQEPYVLAR VFKKSGSGPK NGEQYGAPFI EEPSSPLSGN  180
GGETSEPYEQ PAVEYPLPLL KVEPGLSPQL ENYGNECESP YFNNMCMQEL EDLMFSESFD  240
TDVPRLANGD LDGVSIGSPT SVQDGFRWED LLPEQPQATT EDDTWKDLVI NNVDELLSGN  300
DRFIADGSLG MGTTQHVVHD TDDLLSGPGD YSGDGDFLEI KDLINLEDDI DVSGSNISVG  360
EYEGFDFSAS AIQLRPPRIV QWPMQFDPQG ETSRRMLLAC RPGSQPEQFS STLSAPRILH  420
TSASSRNLSD FADRAISSTG LHTSAEEGWS NDGDLVTLAR EGSGYVPDAG SGSEPQGRCV  480
SVFCCSSRAL PDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-45516017171NO APICAL MERISTEM PROTEIN
1ut4_B7e-45516017171NO APICAL MERISTEM PROTEIN
1ut7_A7e-45516017171NO APICAL MERISTEM PROTEIN
1ut7_B7e-45516017171NO APICAL MERISTEM PROTEIN
4dul_A7e-45516017171NAC domain-containing protein 19
4dul_B7e-45516017171NAC domain-containing protein 19
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.112350.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382443.10.0NAC domain-containing protein 45-like
TrEMBLA0A2K1K6B00.0A0A2K1K6B0_PHYPA; Uncharacterized protein
STRINGPP1S8_36V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.16e-72NAC domain containing protein 2