PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c8_4430V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

LBD

Protein Properties

Length: 266aa MW: 28907.8 Da PI: 9.3852

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c8_4430V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.4	2.7e-39	37	137	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++C++apyf aeq ++kfa+vhk+FGasnv kll ++p +r+da+ ++ yeA+ar++dPvyG+v++i++lqqq+++l+a Pp3c8_4430V3.2.p 37 PCGACKFLRRKCVRGCIFAPYFSAEQgAAKFAAVHKVFGASNVAKLLLHIPAPRRNDAVLTISYEAQARLSDPVYGCVATIFALQQQVASLQA 129 7***********************89************************************************************* PP DUF260 93 elallkee 100 el +++++ Pp3c8_4430V3.2.p 130 ELTMMQTQ 137 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.367	36	138	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.7E-39	37	135	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MRYTSASAVR ARNLGAQDYS GRRNARGYHS SMSSGAPCGA CKFLRRKCVR GCIFAPYFSA 60 EQGAAKFAAV HKVFGASNVA KLLLHIPAPR RNDAVLTISY EAQARLSDPV YGCVATIFAL 120 QQQVASLQAE LTMMQTQLTD RNTHLLQQQR MTMAFGAQGT QAVEFLQPQH LADHSQLSST 180 SGLSMGIPGG SSTGPYTRVK AEDSYLHGMQ THLYDVGMPA TSMEPTIMST EHSLLESMQR 240 FRSGGMAEQS DEGELQALTS LFRRK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-39	30	138	4	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-39	30	138	4	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024381783.1	0.0	LOB domain-containing protein 19-like
TrEMBL	A0A2K1K650	0.0	A0A2K1K650_PHYPA; Uncharacterized protein
STRING	PP1S35_338V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	1e-59	LOB domain-containing protein 20

Link Out ? help Back to Top
Phytozome	Pp3c8_4430V3.2.p