PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c8_4430V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 266aa MW: 28907.8 Da PI: 9.3852 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.4 | 2.7e-39 | 37 | 137 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++C++apyf aeq ++kfa+vhk+FGasnv kll ++p +r+da+ ++ yeA+ar++dPvyG+v++i++lqqq+++l+a Pp3c8_4430V3.2.p 37 PCGACKFLRRKCVRGCIFAPYFSAEQgAAKFAAVHKVFGASNVAKLLLHIPAPRRNDAVLTISYEAQARLSDPVYGCVATIFALQQQVASLQA 129 7*************************89***************************************************************** PP DUF260 93 elallkee 100 el +++++ Pp3c8_4430V3.2.p 130 ELTMMQTQ 137 ***99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.367 | 36 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.7E-39 | 37 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MRYTSASAVR ARNLGAQDYS GRRNARGYHS SMSSGAPCGA CKFLRRKCVR GCIFAPYFSA 60 EQGAAKFAAV HKVFGASNVA KLLLHIPAPR RNDAVLTISY EAQARLSDPV YGCVATIFAL 120 QQQVASLQAE LTMMQTQLTD RNTHLLQQQR MTMAFGAQGT QAVEFLQPQH LADHSQLSST 180 SGLSMGIPGG SSTGPYTRVK AEDSYLHGMQ THLYDVGMPA TSMEPTIMST EHSLLESMQR 240 FRSGGMAEQS DEGELQALTS LFRRK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-39 | 30 | 138 | 4 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-39 | 30 | 138 | 4 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024381783.1 | 0.0 | LOB domain-containing protein 19-like | ||||
TrEMBL | A0A2K1K650 | 0.0 | A0A2K1K650_PHYPA; Uncharacterized protein | ||||
STRING | PP1S35_338V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 1e-59 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c8_4430V3.2.p |