PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_2690V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CAMTA
Protein Properties Length: 1141aa    MW: 127134 Da    PI: 6.8811
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_2690V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.71.1e-53231394117
              CG-1   4 e.kkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                       e ++rwl++ e+++iL+n+ k+ ++l   ++ rp sgs++L++rk +ryfrkDG++w+kkkdgktvrE+he+LK g+v+vl+cyYah+e+n++
  Pp3c8_2690V3.2.p  23 EaQTRWLRPVEVCEILKNYVKYGFKLnpVPPVRPCSGSMFLFDRKTLRYFRKDGHNWRKKKDGKTVREAHERLKTGSVDVLHCYYAHGEDNSS 115
                       4499*****************9998866899************************************************************** PP

              CG-1  94 fqrrcywlLeeelekivlvhylev 117
                       fqrrcyw+L+ +le+ivlvhy+ev
  Pp3c8_2690V3.2.p 116 FQRRCYWMLDPSLEHIVLVHYREV 139
                       **********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.46117145IPR005559CG-1 DNA-binding domain
SMARTSM010767.6E-7220140IPR005559CG-1 DNA-binding domain
PfamPF038591.7E-5023138IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.9E-6537625IPR013783Immunoglobulin-like fold
PfamPF018333.9E-8538624IPR002909IPT domain
CDDcd001020.0076538625No hitNo description
SuperFamilySSF812963.62E-17539625IPR014756Immunoglobulin E-set
SuperFamilySSF484032.02E-17700834IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.9E-17719835IPR020683Ankyrin repeat-containing domain
PfamPF127962.6E-6721801IPR020683Ankyrin repeat-containing domain
CDDcd002043.49E-15723828No hitNo description
PROSITE profilePS5029717.767740834IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0021773802IPR002110Ankyrin repeat
PROSITE profilePS500889.404773805IPR002110Ankyrin repeat
SMARTSM002484300812843IPR002110Ankyrin repeat
SMARTSM00015130897919IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.888898926IPR000048IQ motif, EF-hand binding site
SMARTSM0001532943965IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.035944973IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.657963992IPR000048IQ motif, EF-hand binding site
SMARTSM000150.00449851007IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.459861010IPR000048IQ motif, EF-hand binding site
PfamPF006120.00139881007IPR000048IQ motif, EF-hand binding site
SMARTSM000156710601082IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.76610621090IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1141 aa     Download sequence    Send to blast
MAASRSRSGS QQPDIDIRQI ISEAQTRWLR PVEVCEILKN YVKYGFKLNP VPPVRPCSGS  60
MFLFDRKTLR YFRKDGHNWR KKKDGKTVRE AHERLKTGSV DVLHCYYAHG EDNSSFQRRC  120
YWMLDPSLEH IVLVHYREVT EGGRFTMSDS QHSAPAAHAA SPPEVSNPAT SPELDQDDAD  180
VIESEEVEEH SSLDPIVSPN APQDTLLDQL TPSARASADL NNSLMNGWIG GGSAASNMWM  240
PSSNRVGTSS LENLLNAPTG LTPRIGPFPQ QSSDKQQLGN NQFPDMFGTQ EPFSNGQRQE  300
SFTGAIDVAG WSRQMMDNNT RNNSTFGQSS DGPFAPHTAS GPPTYVKQES MGGATMWSDI  360
LEQCTTPSTH RNIMESLMNN NQLEMSDSPR TQDLGSSLVP PSKGILEALS PRGLGREPQT  420
PLEASLQAVT QEKALKSAGL YQRRLYGMRS ESQQLDLQFE RKSPMEKSPE SEPFPKLDSF  480
GRWMSHTLEA QNFPSPGAFQ SSWPGTPTMG FPGLPDDMYQ MQVDASLSTS VVADQRYSIT  540
DSSPEWAYAS EGAKVLVSGV FLGDYANASD IKWHCMFGEV EVPAEVINGV VLRCKAPPHA  600
PGRVSFYVTC GDRQAHSEIR EFEYRAGGRV VPDTKVERQA TEERLLKVRL AQLLLAESDE  660
DPGQLDDATD MKLQCLSPFS SSHSHSDWQE MENLANTSDH SQDINFHDRL LQMLLKSRMQ  720
KWLVCKIQEE GKGPSVLDAQ GQGVLHMAAA LGYDWAIAPM LAAGVPINFR DARGWTALHW  780
AASFAKEQVV IALLGHNADP GAVTDPTPSC PSGQTPADLA LMKGHVGIGG FLAESSLTRR  840
LNAMSLADQS PITVANAQFA GETAVAKLSR RDSIKHTLSS KSEDSVSIKE SLQAVRNAAR  900
AAALIQAAFR QHSFRKREEA EEEEASMKFD EYGMTESQMR GFVAARAAQR IQKAYRGHQE  960
KKQQLAASRI QQKFRSWKVR KDFVNLRQRV VRIQAHVRGN LVRRRFKKLL WSVGVLDKVI  1020
LRWRRKRSGL RGFKSGDLGI DTKEDDEEFL KEGRKLAEKA VEKAVTTVQT MVRSQPARDQ  1080
YRRLLEGTIK AEKLGQFQQA SPQEFHTSPD VEDYSYQELQ NQHMNQYLPH NGDQHMTFTD  1140
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.168900.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381994.10.0calmodulin-binding transcription activator 3-like
RefseqXP_024381996.10.0calmodulin-binding transcription activator 3-like
RefseqXP_024381997.10.0calmodulin-binding transcription activator 3-like
TrEMBLA0A2K1K5Y10.0A0A2K1K5Y1_PHYPA; Uncharacterized protein
STRINGPP1S35_152V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.21e-122Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains