PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Pp3c8_25530V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C3H

Protein Properties

Length: 257aa MW: 27632.2 Da PI: 9.251

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c8_25530V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.8	1.5e-06	57	69	14	26
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 C++Gd CkFaHg Pp3c8_25530V3.1.p 57 KCRRGDACKFAHG 69 6***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	9.047	51	71	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.8E-6	51	75	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.4E-4	57	69	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
YEGVQGTMEG IVRVRVPGMQ GTMEGIVRGR VSREPGYDGG CCKRKGIMGS RNFRNEKCRR 60 GDACKFAHGV FEYRPHPARY LAQPCKDGTG GRSGGSYAGS PQAGVAMSHD GAFGLTLVGH 120 AQYPSQVSPP LSPSGLPPPS PRLAEEWEKL AGLFSSAVSV HWRHLDRLNS MPTVSILSAR 180 EHRMLNSGMH PGSARTSPEG SVPGTPTKVK ENDDEELMVQ RAESGQIEGT AGPGPSERPV 240 CRNLFWPSGI RYTFQL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024378736.1	2e-28	zinc finger CCCH domain-containing protein 35-like
Refseq	XP_024378891.1	2e-28	zinc finger CCCH domain-containing protein 35-like isoform X1
Refseq	XP_024378892.1	2e-28	zinc finger CCCH domain-containing protein 35-like isoform X2
TrEMBL	A0A2K1K8R8	0.0	A0A2K1K8R8_PHYPA; Uncharacterized protein (Fragment)
STRING	PP1S177_93V6.1	9e-28	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25900.2	1e-10	C3H family protein

Link Out ? help Back to Top
Phytozome	Pp3c8_25530V3.1.p