PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c8_21660V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 325aa MW: 35494.6 Da PI: 7.3242 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.7 | 8.3e-43 | 10 | 110 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCaaCk++rrkC++dC+l+pyfp +qpk+f+nvhklFG+sn+l++lk++++++red+++s++yeA+ r +dPv+G++gvi+ lq+q+++lk Pp3c8_21660V3.4.p 10 ACAACKYQRRKCTSDCPLSPYFPPDQPKRFQNVHKLFGVSNILRILKHVDPSKREDTVKSIAYEADTREKDPVHGCLGVITILQNQVSKLKD 101 7******************************************************************************************* PP DUF260 93 elallkeel 101 ela+++e+l Pp3c8_21660V3.4.p 102 ELAVVREQL 110 ****99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.426 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-41 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MTGSGSTNTA CAACKYQRRK CTSDCPLSPY FPPDQPKRFQ NVHKLFGVSN ILRILKHVDP 60 SKREDTVKSI AYEADTREKD PVHGCLGVIT ILQNQVSKLK DELAVVREQL YLLQQQHNFN 120 QQAQVQQIVG SLGGNTSVVN VSSGQETNVL IQQLQEYNGM NHLSSDFAKS NLLSISCFES 180 DQYLRNDKYD IKSASSSRFD VGRYISGDSP VQQSVLLGSG GPVKESPVHQ SEPPRGANVF 240 NGYGMADPGS TFTDTSGDHR ILQDVDHAFA TPDPYAMAIR RRGSGLLNLT IASDAELRRA 300 TGGHHGVPEH ELKSAGVYLT LTNN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-36 | 11 | 110 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-36 | 11 | 110 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024383295.1 | 0.0 | LOB domain-containing protein 33-like isoform X1 | ||||
TrEMBL | A0A2K1K897 | 0.0 | A0A2K1K897_PHYPA; Uncharacterized protein | ||||
STRING | PP1S9_450V6.1 | 1e-174 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 5e-42 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c8_21660V3.4.p |