PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_21000V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ARR-B
Protein Properties Length: 739aa    MW: 79207.2 Da    PI: 6.0612
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_21000V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.81.2e-28284337155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Pp3c8_21000V3.1.p 284 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMGVQGLTRENVASHLQKYRL 337
                        79*******************.********************************8 PP
2Response_reg66.81e-22942021109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+p+ + ll+++l    y +v+++  +++al ll+e    +Dl++ D++mp+mdG++ll+     e++lp+i+++++ge + + e +
  Pp3c8_21000V3.1.p  94 VLVVDDDPTCLVLLERMLILCSY-RVTTCGRATDALLLLREDIgkFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMMSGNGETSAVMEGV 183
                        89*********************.***************998777*******************87754.558******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga d+l Kp+ ++el++
  Pp3c8_21000V3.1.p 184 IHGACDYLIKPVGIKELRN 202
                        ****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.1E-3391216IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.8E-3891234No hitNo description
SMARTSM004481.0E-2892204IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.9793208IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.3E-2094202IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.70E-2795207No hitNo description
SuperFamilySSF466891.51E-19281341IPR009057Homeodomain-like
PROSITE profilePS5129412.928281340IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-30282342IPR009057Homeodomain-like
TIGRFAMsTIGR015579.8E-25284337IPR006447Myb domain, plants
PfamPF002496.5E-8286336IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MGAEGGMQRA IVLSWSIATS GGNVSCRVGM GESRDGGSQV MVAPQQLQLP LKRSHQNQNN  60
RQCSGAINGA SNSVRGANPA MLDTPDEFPV GMRVLVVDDD PTCLVLLERM LILCSYRVTT  120
CGRATDALLL LREDIGKFDL VISDVDMPDM DGFKLLELVG LEMDLPVIMM SGNGETSAVM  180
EGVIHGACDY LIKPVGIKEL RNVWQHVVRK KRQEVKAVSM KSIEEAGGCE RQKRAGGADD  240
ADYTSSATDT TDGNWKLSKR RKGEFKEENE DDNEENDDPS TMKKPRVVWS VELHQQFVSA  300
VNQLGIDKAV PKRILELMGV QGLTRENVAS HLQKYRLYLK RLSGVTNQQC SMSAHFCGTE  360
PSSMISPDMG IANGQLTPQA LAQLHMLGRM NSSNVIGFSG GLDPTLSHQF FLQDLPRPPH  420
LKDMLKNNAG FLSSFPNGLQ HLDQLSEPHH LSVVNDLEDY PTNTKVFPQL NGNPGMSIGS  480
VGIAETNFGS NSNGDSLLMH ILHSRAAHQG GGSSSNLPQP RAGLSPSHPL SNDINFAHVG  540
SLPNLAGNLV PTAELSSIPG SAGGRDLSSS VGFTGASLSS PLGSIVRGPL AAEEPSNLVN  600
STSGTFSCMV PSVQSSILRG VALHTSLNEG LDQQLPMWAL YQNPVNRLSH GNSQGLSHDT  660
LQWSGLTENL GLGDMGQSLS AGLSSQYSSQ SQDHGIGFAA RSQRIAYTQQ NVGFPVSSAL  720
DSRMVRSSYE PEGFQGVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-22280343164ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383275.10.0two-component response regulator ORR24-like
TrEMBLA0A2K1K8840.0A0A2K1K884_PHYPA; Uncharacterized protein
STRINGPP1S362_27V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-102response regulator 2