PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_20710V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 311aa    MW: 37184.8 Da    PI: 8.0624
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_20710V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.25.3e-2460141186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W  +e+++ i++r e+e+++ ++k++k+lWe +s km+e+ ++rs+ qCk+kw+nl +ryk  +++e ++     ++cp+f++l+
  Pp3c8_20710V3.1.p  60 QWGYHETKEFIAIRAELEKDFTQTKRNKTLWELISGKMKEKSYRRSADQCKCKWKNLVNRYKGKETSEPDN----GRQCPFFEELH 141
                        7*******************************************************************984....668******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.22E-2659124No hitNo description
PfamPF138374.4E-2260142No hitNo description
PROSITE profilePS500906.71361117IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAYAMRPPQT GLMGDHLTIM TSVPNIAPLA TMQSASDMAG ESVVTPDGRR GVKKEDRIPQ  60
WGYHETKEFI AIRAELEKDF TQTKRNKTLW ELISGKMKEK SYRRSADQCK CKWKNLVNRY  120
KGKETSEPDN GRQCPFFEEL HTIFVERAKN MDRLLLESEP GSRPKKKVKR GELKLSDEDT  180
EEEEENKDDD EDERLQRRKK RKSDKERQRV TADKYRANSM QEVLEDFFQQ QLKAEAMWRD  240
ILDSREMDRR LKEREWQKNM EFLEHDRIAR EHAWREREDE WREREELRAE KQDEIFAQLF  300
TKYAQRNASR *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.99850.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381970.10.0trihelix transcription factor GT-3b-like
TrEMBLA0A2K1K8640.0A0A2K1K864_PHYPA; Uncharacterized protein
STRINGPP1S285_47V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP22621535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.12e-37Trihelix family protein