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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c8_1870V3.2.p | ||||||||
Common Name | PHYPADRAFT_161688 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | CO-like | ||||||||
Protein Properties | Length: 486aa MW: 53082.8 Da PI: 5.8336 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 28.2 | 3.8e-09 | 24 | 66 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ ++++ ++++Ce ++ +lC C + H+ H++v Pp3c8_1870V3.2.p 24 RACDGCGSQGARWYCEADNAYLCSRCDRSVHSAnalasrHERV 66 68*****************************667888888876 PP | |||||||
2 | CCT | 73 | 7.2e-25 | 438 | 481 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Pp3c8_1870V3.2.p 438 REARVMRYKEKRRTRLFSKKIRYEVRKLNAECRPRMKGRFVKRT 481 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.4E-10 | 21 | 68 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 11.035 | 21 | 68 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.48E-8 | 24 | 68 | No hit | No description |
Pfam | PF00643 | 8.0E-7 | 24 | 66 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.874 | 438 | 480 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.2E-18 | 438 | 480 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MARPKSTAHT NMATAMAIAG RASRACDGCG SQGARWYCEA DNAYLCSRCD RSVHSANALA 60 SRHERVRLNP HGTVSQVPKK ALVDTSGADG NDAHKPHHPR STHTHFLPSR KRSRLCQRPN 120 PHLQHAADIS NPEHRRGKMK TESRNPGESH EVPNFITINI QESPLSFAHD SATGISMAEF 180 CKGRATATAA MYVGVEDAYE ELSSGDSGPD FLVPNGYTED FDSAIGAPTE YHQNAGSPLD 240 SGNGDEDSDN SHEMACVGDG LQLCGSDERY EGYPLEFSDI VGLGNGDAFE EDCENTSGFV 300 DECCEVNGGG LGNGMECSLQ AKMSLEQQKG FSFSKDFYYE VNQECIVPDS YDLIRKEVAD 360 VLRCSLEGEP MKHTPSLLQL NYEDVLSAWS DRCLWTDGKC PQKLPDDSYS EIAGDVGLVP 420 DLSNGCQAVP GGGGDGGREA RVMRYKEKRR TRLFSKKIRY EVRKLNAECR PRMKGRFVKR 480 TPGCS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 448 | 464 | RRTRLFSKKIRYEVRKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.17644 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024382894.1 | 0.0 | zinc finger protein CONSTANS-LIKE 6-like | ||||
TrEMBL | A0A2K1K5S1 | 0.0 | A0A2K1K5S1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S35_69V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 2e-22 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Pp3c8_1870V3.2.p |
Entrez Gene | 5922285 |
Publications ? help Back to Top | |||
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