 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pp3c8_1620V3.4.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
| Family |
NF-YC |
| Protein Properties |
Length: 297aa MW: 32387.8 Da PI: 4.552 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pp3c8_1620V3.4.p | genome | COSMOSS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 56 | 8.9e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++ade+v +i+ +Pvl+ska elf+ +l +++ + +t++ ++++v+ +fdfl +iv +
Pp3c8_1620V3.4.p 6 DTRFPAARIKKIMQADEEVGKIAMATPVLISKALELFLQNLCDKTYEITLRRGAKTMNSFHLKQCVQTNSVFDFLQEIVSK 86
5789*************************************************************************9976 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MKKKLDTRFP AARIKKIMQA DEEVGKIAMA TPVLISKALE LFLQNLCDKT YEITLRRGAK 60
TMNSFHLKQC VQTNSVFDFL QEIVSKVPDL GTETTCDERN GGKRRKQSDG DDSDEEEVVK 120
RPKSEEQSAS GRGRGRGRGR GRGRGRGRGS NGTPSTRTIG VEKAEDSDDA EMDTYSPSPD 180
RANIILDPIV HKAIPKPEEA VSANPSPTSS GPSKSPKVLD FDLNMDLDEN GEIPAGADEA 240
TAKEEEIELD GPSNVPTQDL DVDSEHVLGC TLHLQRSELC PSVHSDEDDY DCEDDG*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1jfi_A | 2e-24 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 137 | 147 | RGRGRGRGRGR |
| 2 | 139 | 148 | RGRGRGRGRG |
