PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c8_14580V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 292aa MW: 32544.3 Da PI: 6.7422 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.8 | 7.7e-43 | 11 | 111 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCaaCk++rrkC++dC+l+pyfp +qpk+fanvhklFG+sn+l++lk++++++red+++s++yeA+ r +dPv+G++gvi+ lq+q+++lk+ Pp3c8_14580V3.2.p 11 ACAACKYQRRKCSADCPLSPYFPPDQPKRFANVHKLFGVSNILRILKHVDPSKREDTVKSIAYEADTREKDPVHGCLGVITVLQNQVSKLKE 102 7******************************************************************************************* PP DUF260 93 elallkeel 101 el+ ++e+l Pp3c8_14580V3.2.p 103 ELNIAREQL 111 ****99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.426 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-41 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MTGSSGSTNT ACAACKYQRR KCSADCPLSP YFPPDQPKRF ANVHKLFGVS NILRILKHVD 60 PSKREDTVKS IAYEADTREK DPVHGCLGVI TVLQNQVSKL KEELNIAREQ LFLMEQQQQQ 120 AVAAAGQLHS FHGQPGLPSG SAFDDDESQF LRHHIGFQDV HRFDSKFDQK LNNLPMDYRY 180 GADDASSMIC QMKVDHAEQL RRAGSYFGMD PSYDESPVSH HQMHMQAALE QDPSYALRSS 240 PNNSLSGFGI AADGDMKRAN YFITSGQCQV SDHDLQRAGV YLTLTNQHCR D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-38 | 4 | 112 | 4 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-38 | 4 | 112 | 4 | 112 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024382351.1 | 0.0 | LOB domain-containing protein 4-like | ||||
TrEMBL | A0A2K1K788 | 0.0 | A0A2K1K788_PHYPA; Uncharacterized protein | ||||
STRING | PP1S184_36V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 7e-42 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c8_14580V3.2.p |