PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_14580V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LBD
Protein Properties Length: 292aa    MW: 32544.3 Da    PI: 6.7422
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_14580V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.87.7e-43111111101
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        aCaaCk++rrkC++dC+l+pyfp +qpk+fanvhklFG+sn+l++lk++++++red+++s++yeA+ r +dPv+G++gvi+ lq+q+++lk+
  Pp3c8_14580V3.2.p  11 ACAACKYQRRKCSADCPLSPYFPPDQPKRFANVHKLFGVSNILRILKHVDPSKREDTVKSIAYEADTREKDPVHGCLGVITVLQNQVSKLKE 102
                        7******************************************************************************************* PP

             DUF260  93 elallkeel 101
                        el+ ++e+l
  Pp3c8_14580V3.2.p 103 ELNIAREQL 111
                        ****99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.42610111IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-4111108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MTGSSGSTNT ACAACKYQRR KCSADCPLSP YFPPDQPKRF ANVHKLFGVS NILRILKHVD  60
PSKREDTVKS IAYEADTREK DPVHGCLGVI TVLQNQVSKL KEELNIAREQ LFLMEQQQQQ  120
AVAAAGQLHS FHGQPGLPSG SAFDDDESQF LRHHIGFQDV HRFDSKFDQK LNNLPMDYRY  180
GADDASSMIC QMKVDHAEQL RRAGSYFGMD PSYDESPVSH HQMHMQAALE QDPSYALRSS  240
PNNSLSGFGI AADGDMKRAN YFITSGQCQV SDHDLQRAGV YLTLTNQHCR D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-3841124112LOB family transfactor Ramosa2.1
5ly0_B6e-3841124112LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382351.10.0LOB domain-containing protein 4-like
TrEMBLA0A2K1K7880.0A0A2K1K788_PHYPA; Uncharacterized protein
STRINGPP1S184_36V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.17e-42LOB domain-containing protein 25