PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c7_9340V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 282aa MW: 30451.2 Da PI: 8.1982 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.9 | 7.9e-39 | 45 | 146 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++C++apyf aeq +++fa+vhk+FGasnv kll ++p +r da+ ++ yeA+ar++dPvyG+v++i++lqqq+++l+a Pp3c7_9340V3.1.p 45 PCGACKFLRRKCVRGCIFAPYFGAEQgAARFAAVHKIFGASNVAKLLLHIPVPRRCDAVLTISYEAQARLSDPVYGCVATIFALQQQVASLQA 137 7***********************9989***************************************************************** PP DUF260 93 elallkeel 101 ela+++++l Pp3c7_9340V3.1.p 138 ELAMVQAQL 146 *****9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.951 | 44 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.4E-38 | 45 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MRGGLSNFES VTTGLVRSRS SWGGSSSTFG EGSGRYATSM SSGAPCGACK FLRRKCVRGC 60 IFAPYFGAEQ GAARFAAVHK IFGASNVAKL LLHIPVPRRC DAVLTISYEA QARLSDPVYG 120 CVATIFALQQ QVASLQAELA MVQAQLVNRQ AVVHQIHQHQ QQHHQHHHHL QQQHEQISTM 180 SPGHVPSSAY MQQHEHSQLS PSDISMSIPS GSGSVKEEGN SFLGMQHYGD LGLGSSSLEP 240 MSGNQHSLLE NIHKPRGGGE NIEQTDHEGD LQALALLLRR K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-36 | 38 | 147 | 4 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-36 | 38 | 147 | 4 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.7646 | 6e-98 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024381331.1 | 0.0 | LOB domain-containing protein 29-like | ||||
Refseq | XP_024381332.1 | 0.0 | LOB domain-containing protein 29-like | ||||
TrEMBL | A0A2K1KB33 | 0.0 | A0A2K1KB33_PHYPA; Uncharacterized protein | ||||
STRING | PP1S261_2V6.1 | 2e-97 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 7e-62 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c7_9340V3.1.p |