PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_7990V3.7.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 743aa    MW: 80987.2 Da    PI: 8.3425
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_7990V3.7.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.5e-16240338197
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k l+ sd+++ grlvlpk +ae++   + ++e+  l+++d +gr W +++++  +++s++yvl+ G     ++ +L +gD+v+F++ +  +
  Pp3c7_7990V3.7.p 240 FEKMLSASDAGRIGRLVLPKACAEAYfpPIHQPEGLPLRIQDVTGRDWVFQFRFwpNNNSRMYVLE-GVTPCIQSMKLHAGDTVTFSRLE-AD 330
                       89**************************555556778***************9989999999***9.********************765.56 PP

                       E..EEEEE CS
                B3  90 felvvkvf 97 
                       ++lv++ +
  Pp3c7_7990V3.7.p 331 GKLVMGYR 338
                       66666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-27235340IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-18237339IPR015300DNA-binding pseudobarrel domain
CDDcd100172.56E-20238339No hitNo description
SMARTSM010191.4E-16240340IPR003340B3 DNA binding domain
PROSITE profilePS5086310.687240341IPR003340B3 DNA binding domain
PfamPF023621.2E-13240339IPR003340B3 DNA binding domain
PROSITE profilePS5105012.878474524IPR011124Zinc finger, CW-type
PfamPF074961.0E-9479521IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MTHLESGKVV DPAVRGWCEG FGAALAACQS DGGAWQPSSA ARTSLSPPTG LIRPWSAPET  60
DISMKSKDAA DSVSREHMTL EVVEYGGEGT EIDRNPCSDR TKAGGAAGGS GSGSSQVAGH  120
VIFHRFVSKA VVRHLILYNL KKMLISAADV KCPSLQLGKC FAHQAFVIFL HHHNNKYNMN  180
KSLLNIYFCF DFQGPLRVAR PPGEGRGRNQ LLPRYWPRIT DQELKQINSG DMQTTITPLF  240
EKMLSASDAG RIGRLVLPKA CAEAYFPPIH QPEGLPLRIQ DVTGRDWVFQ FRFWPNNNSR  300
MYVLEGVTPC IQSMKLHAGD TVTFSRLEAD GKLVMGYRKA PTSLSSQDAG ATRVGANSNT  360
GFSNPSSVVI QSADGWGSNV GGSKSKESGI SIGNLWSSQM DRKRGRPLGS KSKRLRLDSI  420
DSMLLKSNWE EAQELLRPAP SASSTVVTID GHEFEEYSEP PVLSKRTFIS NAPSGAQEQW  480
AQCDDCGTWR RVPVDAFVPA RWSCSQNTWD LTRAQCSAAQ EVSSDKLEVL LGPGPTSEGG  540
KQECAPKLTS TSKDENAPTT SAAAGLDALA QAASTSLSPA RTTKHPRHRP GCTCIVCIQP  600
PSGKGPKHKA SCICNVCLTV KRRFRTLMQR RKKRQCEREF EAFRNKREWH EEDTSDLVGV  660
VGRSGTADAA NIVDDNLSTA LIRSRDGGSE DGPLKGAIDL NIQPDHEERV SMSNQTVWRA  720
GMQEESSPQS FQEIQCSQAH QN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-622173402124B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1620632KRRFRTLMQRRKK
2620633KRRFRTLMQRRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380837.10.0B3 domain-containing protein Os07g0679700-like isoform X3
SwissprotQ0D5G41e-164Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2K1JVP00.0A0A2K1JVP0_PHYPA; Uncharacterized protein
STRINGPP1S42_132V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-151HSI2-like 1