PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c7_7990V3.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 743aa MW: 80987.2 Da PI: 8.3425 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.1 | 2.5e-16 | 240 | 338 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k l+ sd+++ grlvlpk +ae++ + ++e+ l+++d +gr W +++++ +++s++yvl+ G ++ +L +gD+v+F++ + + Pp3c7_7990V3.7.p 240 FEKMLSASDAGRIGRLVLPKACAEAYfpPIHQPEGLPLRIQDVTGRDWVFQFRFwpNNNSRMYVLE-GVTPCIQSMKLHAGDTVTFSRLE-AD 330 89**************************555556778***************9989999999***9.********************765.56 PP E..EEEEE CS B3 90 felvvkvf 97 ++lv++ + Pp3c7_7990V3.7.p 331 GKLVMGYR 338 66666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.9E-27 | 235 | 340 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-18 | 237 | 339 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.56E-20 | 238 | 339 | No hit | No description |
SMART | SM01019 | 1.4E-16 | 240 | 340 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.687 | 240 | 341 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-13 | 240 | 339 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 12.878 | 474 | 524 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.0E-9 | 479 | 521 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 743 aa Download sequence Send to blast |
MTHLESGKVV DPAVRGWCEG FGAALAACQS DGGAWQPSSA ARTSLSPPTG LIRPWSAPET 60 DISMKSKDAA DSVSREHMTL EVVEYGGEGT EIDRNPCSDR TKAGGAAGGS GSGSSQVAGH 120 VIFHRFVSKA VVRHLILYNL KKMLISAADV KCPSLQLGKC FAHQAFVIFL HHHNNKYNMN 180 KSLLNIYFCF DFQGPLRVAR PPGEGRGRNQ LLPRYWPRIT DQELKQINSG DMQTTITPLF 240 EKMLSASDAG RIGRLVLPKA CAEAYFPPIH QPEGLPLRIQ DVTGRDWVFQ FRFWPNNNSR 300 MYVLEGVTPC IQSMKLHAGD TVTFSRLEAD GKLVMGYRKA PTSLSSQDAG ATRVGANSNT 360 GFSNPSSVVI QSADGWGSNV GGSKSKESGI SIGNLWSSQM DRKRGRPLGS KSKRLRLDSI 420 DSMLLKSNWE EAQELLRPAP SASSTVVTID GHEFEEYSEP PVLSKRTFIS NAPSGAQEQW 480 AQCDDCGTWR RVPVDAFVPA RWSCSQNTWD LTRAQCSAAQ EVSSDKLEVL LGPGPTSEGG 540 KQECAPKLTS TSKDENAPTT SAAAGLDALA QAASTSLSPA RTTKHPRHRP GCTCIVCIQP 600 PSGKGPKHKA SCICNVCLTV KRRFRTLMQR RKKRQCEREF EAFRNKREWH EEDTSDLVGV 660 VGRSGTADAA NIVDDNLSTA LIRSRDGGSE DGPLKGAIDL NIQPDHEERV SMSNQTVWRA 720 GMQEESSPQS FQEIQCSQAH QN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 4e-62 | 217 | 340 | 2 | 124 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 620 | 632 | KRRFRTLMQRRKK |
2 | 620 | 633 | KRRFRTLMQRRKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024380837.1 | 0.0 | B3 domain-containing protein Os07g0679700-like isoform X3 | ||||
Swissprot | Q0D5G4 | 1e-164 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A2K1JVP0 | 0.0 | A0A2K1JVP0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S42_132V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-151 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c7_7990V3.7.p |