PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c7_7990V3.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 802aa MW: 86266.4 Da PI: 7.2469 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.9 | 2.7e-16 | 163 | 261 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k l+ sd+++ grlvlpk +ae++ + ++e+ l+++d +gr W +++++ +++s++yvl+ G ++ +L +gD+v+F++ + + Pp3c7_7990V3.6.p 163 FEKMLSASDAGRIGRLVLPKACAEAYfpPIHQPEGLPLRIQDVTGRDWVFQFRFwpNNNSRMYVLE-GVTPCIQSMKLHAGDTVTFSRLE-AD 253 89**************************555556778***************9989999999***9.********************765.56 PP E..EEEEE CS B3 90 felvvkvf 97 ++lv++ + Pp3c7_7990V3.6.p 254 GKLVMGYR 261 66666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-26 | 158 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.54E-18 | 160 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.98E-20 | 161 | 262 | No hit | No description |
PROSITE profile | PS50863 | 10.687 | 163 | 264 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-16 | 163 | 263 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-13 | 163 | 262 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 12.878 | 397 | 447 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.1E-9 | 402 | 444 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 802 aa Download sequence Send to blast |
MTHLESGKVV DPAVRGWCEG FGAALAACQS DGGAWQPSSA ARTSLSPPTG LIRPWSAPET 60 DISMKSKDAA DSVSREHMTL EVVEYGGEGT EIDRNPCSDR TKAGGAAGGS GSGSSQGPLR 120 VARPPGEGRG RNQLLPRYWP RITDQELKQI NSGDMQTTIT PLFEKMLSAS DAGRIGRLVL 180 PKACAEAYFP PIHQPEGLPL RIQDVTGRDW VFQFRFWPNN NSRMYVLEGV TPCIQSMKLH 240 AGDTVTFSRL EADGKLVMGY RKAPTSLSSQ DAGATRVGAN SNTGFSNPSS VVIQSADGWG 300 SNVGGSKSKE SGISIGNLWS SQMDRKRGRP LGSKSKRLRL DSIDSMLLKS NWEEAQELLR 360 PAPSASSTVV TIDGHEFEEY SEPPVLSKRT FISNAPSGAQ EQWAQCDDCG TWRRVPVDAF 420 VPARWSCSQN TWDLTRAQCS AAQEVSSDKL EVLLGPGPTS EGGKQECAPK LTSTSKDENA 480 PTTSAAAGLD ALAQAASTSL SPARTTKHPR HRPGCTCIVC IQPPSGKGPK HKASCICNVC 540 LTVKRRFRTL MQRRKKRQCE REFEAFRNKR EWHEEDTSDL VGVVGRSGTA DAANIVDDNL 600 STALIRSRDG GSEDGPLKGA IDLNIQPDHE ERVSMVRLLQ DATLPLSAYL HQQRLSTLYV 660 GDLVSDHVSN DATSSQEDTP SESSSEAEAD NGLEVAGHVR HEGQRTQTSL GYVEQPNCLE 720 SWDARGVKPA EFSGDSVLSS SSKLELNMMN NAAATSAKKH VTGAGRGRQI CIGCGEQIGS 780 AAKVCRRCGT CTAFGEEKLR C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 4e-62 | 140 | 263 | 2 | 124 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 543 | 555 | KRRFRTLMQRRKK |
2 | 543 | 556 | KRRFRTLMQRRKKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.6047 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024380836.1 | 0.0 | B3 domain-containing protein Os07g0679700-like isoform X2 | ||||
Swissprot | Q6Z3U3 | 1e-164 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A2K1JVP0 | 0.0 | A0A2K1JVP0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S31_242V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-157 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c7_7990V3.6.p |
Publications ? help Back to Top | |||
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