PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_7990V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 585aa    MW: 62957.7 Da    PI: 7.7478
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_7990V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-16283381197
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k l+ sd+++ grlvlpk +ae++   + ++e+  l+++d +gr W +++++  +++s++yvl+ G     ++ +L +gD+v+F++ +  +
  Pp3c7_7990V3.1.p 283 FEKMLSASDAGRIGRLVLPKACAEAYfpPIHQPEGLPLRIQDVTGRDWVFQFRFwpNNNSRMYVLE-GVTPCIQSMKLHAGDTVTFSRLE-AD 373
                       89**************************555556778***************9989999999***9.********************765.56 PP

                       E..EEEEE CS
                B3  90 felvvkvf 97 
                       ++lv++ +
  Pp3c7_7990V3.1.p 374 GKLVMGYR 381
                       66666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.103.0E-4749IPR013088Zinc finger, NHR/GATA-type
Gene3DG3DSA:2.40.330.106.1E-27278383IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-18280382IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-20281382No hitNo description
PROSITE profilePS5086310.687283384IPR003340B3 DNA binding domain
PfamPF023628.2E-14283382IPR003340B3 DNA binding domain
SMARTSM010191.4E-16283383IPR003340B3 DNA binding domain
PROSITE profilePS5105012.878517567IPR011124Zinc finger, CW-type
PfamPF074967.4E-10522564IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MAMGSTESRK VCWNSKCGTS SSTIWRPGWI TRSGRTAELC DYCGLAYQQS CFCETFHSDD  60
AGWRTCNFCK KRVHCGCVAS AYGIVLLDKG GVECIRCATA HDSAGSISLV GKHGQQLLAP  120
MTHLESGKVV DPAVRGWCEG FGAALAACQS DGGAWQPSSA ARTSLSPPTG LIRPWSAPET  180
DISMKSKDAA DSVSREHMTL EVVEYGGEGT EIDRNPCSDR TKAGGAAGGS GSGSSQGPLR  240
VARPPGEGRG RNQLLPRYWP RITDQELKQI NSGDMQTTIT PLFEKMLSAS DAGRIGRLVL  300
PKACAEAYFP PIHQPEGLPL RIQDVTGRDW VFQFRFWPNN NSRMYVLEGV TPCIQSMKLH  360
AGDTVTFSRL EADGKLVMGY RKAPTSLSSQ DAGATRVGAN SNTGFSNPSS VVIQSADGWG  420
SNVGGSKSKE SGISIGNLWS SQMDRKRGRP LGSKSKRLRL DSIDSMLLKS NWEEAQELLR  480
PAPSASSTVV TIDGHEFEEY SEPPVLSKRT FISNAPSGAQ EQWAQCDDCG TWRRVPVDAF  540
VPARWSCSQN TWDLTRAQCS AAQEVSSDKL EVLLGPGPTS GMCT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-632603832124B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380835.10.0B3 domain-containing protein Os07g0679700-like isoform X1
RefseqXP_024380836.10.0B3 domain-containing protein Os07g0679700-like isoform X2
TrEMBLA0A2K1KAX60.0A0A2K1KAX6_PHYPA; Uncharacterized protein
STRINGPP1S31_242V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-159HSI2-like 1