PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c7_7990V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 585aa MW: 62957.7 Da PI: 7.7478 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.6 | 1.7e-16 | 283 | 381 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k l+ sd+++ grlvlpk +ae++ + ++e+ l+++d +gr W +++++ +++s++yvl+ G ++ +L +gD+v+F++ + + Pp3c7_7990V3.1.p 283 FEKMLSASDAGRIGRLVLPKACAEAYfpPIHQPEGLPLRIQDVTGRDWVFQFRFwpNNNSRMYVLE-GVTPCIQSMKLHAGDTVTFSRLE-AD 373 89**************************555556778***************9989999999***9.********************765.56 PP E..EEEEE CS B3 90 felvvkvf 97 ++lv++ + Pp3c7_7990V3.1.p 374 GKLVMGYR 381 66666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 3.0E-4 | 7 | 49 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene3D | G3DSA:2.40.330.10 | 6.1E-27 | 278 | 383 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.05E-18 | 280 | 382 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.46E-20 | 281 | 382 | No hit | No description |
PROSITE profile | PS50863 | 10.687 | 283 | 384 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-14 | 283 | 382 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-16 | 283 | 383 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 12.878 | 517 | 567 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 7.4E-10 | 522 | 564 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 585 aa Download sequence Send to blast |
MAMGSTESRK VCWNSKCGTS SSTIWRPGWI TRSGRTAELC DYCGLAYQQS CFCETFHSDD 60 AGWRTCNFCK KRVHCGCVAS AYGIVLLDKG GVECIRCATA HDSAGSISLV GKHGQQLLAP 120 MTHLESGKVV DPAVRGWCEG FGAALAACQS DGGAWQPSSA ARTSLSPPTG LIRPWSAPET 180 DISMKSKDAA DSVSREHMTL EVVEYGGEGT EIDRNPCSDR TKAGGAAGGS GSGSSQGPLR 240 VARPPGEGRG RNQLLPRYWP RITDQELKQI NSGDMQTTIT PLFEKMLSAS DAGRIGRLVL 300 PKACAEAYFP PIHQPEGLPL RIQDVTGRDW VFQFRFWPNN NSRMYVLEGV TPCIQSMKLH 360 AGDTVTFSRL EADGKLVMGY RKAPTSLSSQ DAGATRVGAN SNTGFSNPSS VVIQSADGWG 420 SNVGGSKSKE SGISIGNLWS SQMDRKRGRP LGSKSKRLRL DSIDSMLLKS NWEEAQELLR 480 PAPSASSTVV TIDGHEFEEY SEPPVLSKRT FISNAPSGAQ EQWAQCDDCG TWRRVPVDAF 540 VPARWSCSQN TWDLTRAQCS AAQEVSSDKL EVLLGPGPTS GMCT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 5e-63 | 260 | 383 | 2 | 124 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024380835.1 | 0.0 | B3 domain-containing protein Os07g0679700-like isoform X1 | ||||
Refseq | XP_024380836.1 | 0.0 | B3 domain-containing protein Os07g0679700-like isoform X2 | ||||
TrEMBL | A0A2K1KAX6 | 0.0 | A0A2K1KAX6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S31_242V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-159 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c7_7990V3.1.p |