PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c7_7980V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 478aa MW: 55190.2 Da PI: 6.1654 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 129 | 151 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk F ++ +L++H tH Pp3c7_7980V3.2.p 129 CTfeGCGKGFADPGSLRKHAHTH 151 88889**************9998 PP | |||||||
2 | zf-C2H2 | 18.1 | 7.5e-06 | 156 | 180 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + C+ Cgk+F ++s LkrH H Pp3c7_7980V3.2.p 156 FICHydGCGKRFVDSSKLKRHFLIH 180 78*******************8877 PP | |||||||
3 | zf-C2H2 | 22.7 | 2.6e-07 | 186 | 210 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nL++H+rtH Pp3c7_7980V3.2.p 186 FVCPfeGCGKAFSLDFNLRSHMRTH 210 89**********************9 PP | |||||||
4 | zf-C2H2 | 18.5 | 5.6e-06 | 216 | 240 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dCgk++ + + L+ H+r+H Pp3c7_7980V3.2.p 216 HACPyeDCGKRYAHEYKLRAHMRNH 240 679*********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF81995 | 2.41E-7 | 21 | 77 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-13 | 123 | 153 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.074 | 127 | 156 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0034 | 127 | 151 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.98E-8 | 129 | 180 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 129 | 151 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.1E-14 | 154 | 176 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0014 | 156 | 180 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.775 | 156 | 185 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 158 | 180 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.15E-16 | 167 | 220 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.7E-22 | 177 | 209 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 2.3E-4 | 186 | 210 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 14.149 | 186 | 215 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 188 | 210 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.11E-6 | 210 | 243 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.9E-13 | 210 | 242 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.803 | 216 | 246 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0022 | 216 | 240 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 218 | 241 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.23E-5 | 305 | 333 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-7 | 307 | 333 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.219 | 311 | 341 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.039 | 311 | 336 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 313 | 336 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MFHIEQSSLP DHHSDIAMAL AASQQQHHNQ ILQQQQVHLL QQQHILQQQQ IQFLQQQQQL 60 QLQQLQPVYF PPPPRKWVKR WVPQDTVLNQ GKLSILKWVT EDMVAQFTGM AAAMEEQEAE 120 EENEILYLCT FEGCGKGFAD PGSLRKHAHT HGEKQFICHY DGCGKRFVDS SKLKRHFLIH 180 TGEKHFVCPF EGCGKAFSLD FNLRSHMRTH TGENYHACPY EDCGKRYAHE YKLRAHMRNH 240 HDKSIPEMTP PPMHMERDRE RDQELEMSRE RDRDMDRERE REMEKEREIA PVGRPRSGPP 300 RQDVNASDRP FACRYPGCTK RYIHEYKLNL HLRNSHADEN PEFGEEPIGR GDSDGEDDID 360 DGSMQGTPAR AAATARGSGR GKLKIIPKRD PAKQQRRGHL KAQKEVDLNL RVRTLPSETL 420 PTYWRGGQVK HTAPDDSEET EDEDAENTED EGYRYYNGRG EGAMAVDDED TEDDGDQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 2e-35 | 129 | 240 | 8 | 117 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2324 | 2e-77 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024379566.1 | 0.0 | zinc finger transcription factor YY1-like | ||||
TrEMBL | A0A2K1KAX8 | 0.0 | A0A2K1KAX8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S42_134V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.1 | 5e-79 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c7_7980V3.2.p |