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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c7_7950V3.4.p | ||||||||
Common Name | PHYPADRAFT_162363 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 422aa MW: 46997.3 Da PI: 7.1264 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35 | 2.5e-11 | 230 | 277 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k L+ Pp3c7_7950V3.4.p 230 QDHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKTLE 277 5699************************.....9****************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.04 | 227 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-16 | 230 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-16 | 231 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.7E-9 | 231 | 277 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.84E-12 | 232 | 281 | No hit | No description |
SMART | SM00353 | 9.9E-14 | 233 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MQWLSEMGME DHQLVRQFDP LFNQTSVEQY GGGLPSGSSN DYVAPLESLK QQKERQSFAD 60 LDGFYHQERP QKMLKPNCYE PNLSNFQYQA NPHWNTSMSF SSGLDFMTFA THQPSGQNPH 120 QKQEHQMLPQ QLDTYAMPVQ HLHDDGALHP RTPGSRVDSG SSAVSLGANG SKLDALSMEV 180 LRGSSPLSSI EYVQQGKQKI TGFFSPNGGG SRLSMPTQPP PPVKSTGHTQ DHIMAERKRR 240 EKLSQRFIAL SAIVPGLKKM DKASVLGDAI KYVKTLEEKL KTMEERLPKK RIRSLSNKKS 300 SQPSTTPGPV SQGESKPAVV VKQQLSDDVV DEDDCSQPEI EARKIDKNVL IRMHCEKRKS 360 LLVKSLAELE KMKLVILNAN ILSFSAATVD LTCCAQMSEG CEVNTDEIVR CLQELYYTLD 420 D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-14 | 231 | 287 | 8 | 65 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 231 | 287 | 8 | 65 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 231 | 287 | 8 | 65 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 231 | 287 | 8 | 65 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 231 | 287 | 8 | 65 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 231 | 287 | 8 | 65 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 231 | 287 | 8 | 65 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 231 | 287 | 8 | 65 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 240 | ERKRRE |
2 | 236 | 241 | RKRREK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.7303 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024380776.1 | 0.0 | transcription factor bHLH25-like isoform X1 | ||||
Refseq | XP_024380777.1 | 0.0 | transcription factor bHLH25-like isoform X1 | ||||
Refseq | XP_024380778.1 | 0.0 | transcription factor bHLH25-like isoform X1 | ||||
TrEMBL | A0A2K1KAX7 | 0.0 | A0A2K1KAX7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S42_136V6.2 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-34 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c7_7950V3.4.p |
Entrez Gene | 5923663 |
Publications ? help Back to Top | |||
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