PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c7_7470V3.3.p | ||||||||
Common Name | PHYPADRAFT_162379 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NF-YA | ||||||||
Protein Properties | Length: 312aa MW: 33172.4 Da PI: 7.691 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 105.4 | 4.8e-33 | 144 | 200 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +ksrkpylheSRh+hAlrR+Rg+gGrF Pp3c7_7470V3.3.p 144 EEPVYVNAKQYHGILRRRQSRAKAESENKL-IKSRKPYLHESRHQHALRRARGNGGRF 200 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.9E-38 | 142 | 203 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.916 | 143 | 203 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 6.6E-28 | 145 | 200 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.7E-24 | 146 | 168 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 148 | 168 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.7E-24 | 177 | 200 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MHISFVDGHT AGNGSAARNW GSRTGDQIQS SFVTTSMQAP SSAPTDSESA IPTMQALPPQ 60 PGYATSGSED QPPRPPTGVP TAGEYLLPHT QLELGHSMAR AAYPFADPYF GGIVAAYGAQ 120 AVIHPHMLGV QQARMPLPSE MMEEEPVYVN AKQYHGILRR RQSRAKAESE NKLIKSRKPY 180 LHESRHQHAL RRARGNGGRF LNTKAKEGDS KSNSDGNHGS HEGQSSQAGN VSSTRASHSG 240 MDMLSGQGDS VNYHNTMMQH GQNNAYLNLH PPQSFHSSAF HTLPGGSESG DGGSNGNNLV 300 VSGSEHTAVA T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 5e-22 | 144 | 207 | 2 | 65 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.9984 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024380415.1 | 0.0 | nuclear transcription factor Y subunit A-7-like | ||||
Refseq | XP_024380416.1 | 0.0 | nuclear transcription factor Y subunit A-7-like | ||||
TrEMBL | A0A2K1KAU8 | 0.0 | A0A2K1KAU8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S42_174V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 1e-35 | nuclear factor Y, subunit A7 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c7_7470V3.3.p |
Entrez Gene | 5923580 |
Publications ? help Back to Top | |||
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