PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_6850V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 327aa    MW: 35469.9 Da    PI: 8.2175
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_6850V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-18182236256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++keq   Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Pp3c7_6850V3.1.p 182 RKKLRLSKEQSALLEESFKEHSTLNPKQKNALAKQLGLRPRQVEVWFQNRRARTK 236
                       788899***********************************************98 PP
2HD-ZIP_I/II125.81.9e-40182271191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       +kk+rlskeq++lLEesF+e+++L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL+ke +eLr ++
  Pp3c7_6850V3.1.p 182 RKKLRLSKEQSALLEESFKEHSTLNPKQKNALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCVETLTEENRRLQKELQELR-AI 271
                       69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.3E-456143IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.3E-18165232IPR009057Homeodomain-like
SuperFamilySSF466893.43E-18168239IPR009057Homeodomain-like
PROSITE profilePS5007117.297178238IPR001356Homeobox domain
SMARTSM003895.8E-16180242IPR001356Homeobox domain
PfamPF000465.3E-16182236IPR001356Homeobox domain
CDDcd000861.79E-17182239No hitNo description
PRINTSPR000312.2E-5209218IPR000047Helix-turn-helix motif
PROSITE patternPS000270213236IPR017970Homeobox, conserved site
PRINTSPR000312.2E-5218234IPR000047Helix-turn-helix motif
CDDcd146860.00294231270No hitNo description
SMARTSM003407.4E-24238281IPR003106Leucine zipper, homeobox-associated
PfamPF021831.3E-9238271IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MTTMMEGGVR AMHEEAHRMR AMANYGASLG LGVEFSMVNR VGDGGGPRAC PVQLDLLPLR  60
PSSQSNSNSQ VTAPSVPSST SFRGLAWQPL VGSRTNSGSG NEDGEVTTYT SGGRGGSPRC  120
GIDVNQIPST DGEEEAAVSS PSSIGMKRGR GKIQHEFDLE RNATGEMSSR GGSDDEDEGT  180
ARKKLRLSKE QSALLEESFK EHSTLNPKQK NALAKQLGLR PRQVEVWFQN RRARTKLKQT  240
EVDCELLKRC VETLTEENRR LQKELQELRA IKVAPPCVIS HDFYMPLPAA TLTMCPSCER  300
VATVDNRSLT FAKPGFSHLS QSSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230238RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.152550.0gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0280751e-168AB028075.1 Physcomitrella patens mRNA for homeobox protein PpHB4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379713.10.0homeobox-leucine zipper protein HAT4-like
TrEMBLA0A2K1KAR50.0A0A2K1KAR5_PHYPA; Uncharacterized protein
STRINGPP1S42_219V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-68homeobox from Arabidopsis thaliana