![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c7_3790V3.8.p | ||||||||
Common Name | PHYPADRAFT_167103 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 503aa MW: 54322.4 Da PI: 6.3413 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.8 | 9.2e-09 | 115 | 164 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL +l ++ +K++Ka+iL v+ +k+L Pp3c7_3790V3.8.p 115 RKVHKADREKLRRDRLNEQFGELAGVLDPD----RPKNDKATILGDSVQVVKDL 164 5677889*******************9997....79*************99998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.03E-11 | 114 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.316 | 114 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.79E-7 | 115 | 169 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-10 | 115 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-6 | 115 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-6 | 120 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 503 aa Download sequence Send to blast |
MAASSNSWLH QNLLPQHNTQ QQGSPHSLFH HSEFPLHVDS TQPGPLQHMN LGHGGHGIDS 60 HPPLHHGMHS TLHMSVELQQ QQQQLQHPHP PVQVGSGTSG RAVGPTENGD TASVRKVHKA 120 DREKLRRDRL NEQFGELAGV LDPDRPKNDK ATILGDSVQV VKDLRSEVKR LKCEQTSLLD 180 ESRDLQQEKT ELREEKAALK TETEQLQNQL QQRLQGMLPW ISMDPTAALM GAPPYPYPHP 240 HPMPVPQPPS SAVPSSTPPA SEPAPAVPTS QPPVVGPSPF LSLAPPGVYM HPYAIYGARP 300 PERGHPYMPY PPYSASVGNH SHVERPYAQY PSPMSTMPGY MVQMQPPPPP YAVPGMTLVP 360 PGQQPRGPPH STYPPTSGPE TASLEPQGVE TSLQLQTPGG SSRPPSASEQ PPSQRGEDSN 420 KIPEVADLEL TPPGTKEAGD QAVSKPDEMN GGDAISSLTL ASKSLQSRTD DAPLPSRRSE 480 SNLEESRPHG STLEPSPSQA TE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024381252.1 | 0.0 | pollen-specific leucine-rich repeat extensin-like protein 1 | ||||
Refseq | XP_024381254.1 | 0.0 | pollen-specific leucine-rich repeat extensin-like protein 1 | ||||
Refseq | XP_024381255.1 | 0.0 | pollen-specific leucine-rich repeat extensin-like protein 1 | ||||
Refseq | XP_024381256.1 | 0.0 | pollen-specific leucine-rich repeat extensin-like protein 1 | ||||
Refseq | XP_024381257.1 | 0.0 | pollen-specific leucine-rich repeat extensin-like protein 1 | ||||
Refseq | XP_024381258.1 | 0.0 | pollen-specific leucine-rich repeat extensin-like protein 1 | ||||
Refseq | XP_024381259.1 | 0.0 | pollen-specific leucine-rich repeat extensin-like protein 1 | ||||
Refseq | XP_024381260.1 | 0.0 | pollen-specific leucine-rich repeat extensin-like protein 1 | ||||
Refseq | XP_024381262.1 | 0.0 | pollen-specific leucine-rich repeat extensin-like protein 1 | ||||
Refseq | XP_024381263.1 | 0.0 | pollen-specific leucine-rich repeat extensin-like protein 1 | ||||
Refseq | XP_024381264.1 | 0.0 | pollen-specific leucine-rich repeat extensin-like protein 1 | ||||
TrEMBL | A0A2K1KA96 | 0.0 | A0A2K1KA96_PHYPA; Uncharacterized protein | ||||
STRING | PP1S136_27V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19860.1 | 1e-34 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c7_3790V3.8.p |
Entrez Gene | 5934527 |
Publications ? help Back to Top | |||
---|---|---|---|
|