PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c7_3790V3.5.p

Common Name

PHYPADRAFT_167103

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 503aa MW: 54322.4 Da PI: 6.3413

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c7_3790V3.5.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.8	9.2e-09	115	164	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL +l ++ +K++Ka+iL v+ +k+L Pp3c7_3790V3.5.p 115 RKVHKADREKLRRDRLNEQFGELAGVLDPD----RPKNDKATILGDSVQVVKDL 164 5677889*****************9997....79***********99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.03E-11	114	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.316	114	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.79E-7	115	169	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-10	115	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-6	115	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-6	120	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MAASSNSWLH QNLLPQHNTQ QQGSPHSLFH HSEFPLHVDS TQPGPLQHMN LGHGGHGIDS 60 HPPLHHGMHS TLHMSVELQQ QQQQLQHPHP PVQVGSGTSG RAVGPTENGD TASVRKVHKA 120 DREKLRRDRL NEQFGELAGV LDPDRPKNDK ATILGDSVQV VKDLRSEVKR LKCEQTSLLD 180 ESRDLQQEKT ELREEKAALK TETEQLQNQL QQRLQGMLPW ISMDPTAALM GAPPYPYPHP 240 HPMPVPQPPS SAVPSSTPPA SEPAPAVPTS QPPVVGPSPF LSLAPPGVYM HPYAIYGARP 300 PERGHPYMPY PPYSASVGNH SHVERPYAQY PSPMSTMPGY MVQMQPPPPP YAVPGMTLVP 360 PGQQPRGPPH STYPPTSGPE TASLEPQGVE TSLQLQTPGG SSRPPSASEQ PPSQRGEDSN 420 KIPEVADLEL TPPGTKEAGD QAVSKPDEMN GGDAISSLTL ASKSLQSRTD DAPLPSRRSE 480 SNLEESRPHG STLEPSPSQA TE*

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MAASSNSWLH QNLLPQHNTQ QQGSPHSLFH HSEFPLHVDS TQPGPLQHMN LGHGGHGIDS  60
HPPLHHGMHS TLHMSVELQQ QQQQLQHPHP PVQVGSGTSG RAVGPTENGD TASVRKVHKA  120
DREKLRRDRL NEQFGELAGV LDPDRPKNDK ATILGDSVQV VKDLRSEVKR LKCEQTSLLD  180
ESRDLQQEKT ELREEKAALK TETEQLQNQL QQRLQGMLPW ISMDPTAALM GAPPYPYPHP  240
HPMPVPQPPS SAVPSSTPPA SEPAPAVPTS QPPVVGPSPF LSLAPPGVYM HPYAIYGARP  300
PERGHPYMPY PPYSASVGNH SHVERPYAQY PSPMSTMPGY MVQMQPPPPP YAVPGMTLVP  360
PGQQPRGPPH STYPPTSGPE TASLEPQGVE TSLQLQTPGG SSRPPSASEQ PPSQRGEDSN  420
KIPEVADLEL TPPGTKEAGD QAVSKPDEMN GGDAISSLTL ASKSLQSRTD DAPLPSRRSE  480
SNLEESRPHG STLEPSPSQA TE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024381252.1	0.0	pollen-specific leucine-rich repeat extensin-like protein 1
Refseq	XP_024381254.1	0.0	pollen-specific leucine-rich repeat extensin-like protein 1
Refseq	XP_024381255.1	0.0	pollen-specific leucine-rich repeat extensin-like protein 1
Refseq	XP_024381256.1	0.0	pollen-specific leucine-rich repeat extensin-like protein 1
Refseq	XP_024381257.1	0.0	pollen-specific leucine-rich repeat extensin-like protein 1
Refseq	XP_024381258.1	0.0	pollen-specific leucine-rich repeat extensin-like protein 1
Refseq	XP_024381259.1	0.0	pollen-specific leucine-rich repeat extensin-like protein 1
Refseq	XP_024381260.1	0.0	pollen-specific leucine-rich repeat extensin-like protein 1
Refseq	XP_024381262.1	0.0	pollen-specific leucine-rich repeat extensin-like protein 1
Refseq	XP_024381263.1	0.0	pollen-specific leucine-rich repeat extensin-like protein 1
Refseq	XP_024381264.1	0.0	pollen-specific leucine-rich repeat extensin-like protein 1
TrEMBL	A0A2K1KA96	0.0	A0A2K1KA96_PHYPA; Uncharacterized protein
STRING	PP1S136_27V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	1e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c7_3790V3.5.p
Entrez Gene	5934527

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]