PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c7_26690V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 1538aa MW: 171376 Da PI: 8.463 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.3 | 3.5e-10 | 53 | 129 | 14 | 97 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 g ++lp +f+e+hg ++ + +tl+ +sg + + + ++ ++++ + +GWk+Fv +++ +gD vv +l+ +s+f vk++ Pp3c7_26690V3.2.p 53 GFVRLPSSFMEQHG--PRIGNVVTLKGPSGWVGQASV--SN-DEGFAFCGGWKQFVVHHNIGAGDYVVCTLIADSKF--SVKIY 129 5579*********8..568889********9999999..55.56778888**********************99999..88776 PP | |||||||
2 | B3 | 49.5 | 7.9e-16 | 319 | 399 | 15 | 99 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +++ fa++ +ee +l l d ++W v++ + +++vl++GW +Fv++n+L+ gD+vvF+l++ ++ +l+v++fr Pp3c7_26690V3.2.p 319 QSYFSSVFARKWF--PEERAQLLLIDDADNKWAVTF--IPTASHMVLGAGWAKFVRDNKLEKGDVVVFELKNPNTLTLTVHIFRV 399 5555666777765..33455799*************..999999*************************9888**********95 PP | |||||||
3 | B3 | 42.6 | 1.1e-13 | 737 | 802 | 31 | 98 |
.--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 e+++ tl d++g++W k ++ +++r l++GWk+F+ ++ L+egD++vF++++r + +l++ +fr Pp3c7_26690V3.2.p 737 DETRDATLVDSTGQTWMCKWLVNHSGRR--LSAGWKRFAVDHLLEEGDVCVFEMIDRINLTLLINIFR 802 355689**************77777766..9************************9999999999998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.9E-16 | 36 | 131 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.22E-17 | 37 | 139 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.82E-13 | 37 | 130 | No hit | No description |
SMART | SM01019 | 1.0E-6 | 39 | 132 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.896 | 40 | 132 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-7 | 53 | 130 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-18 | 298 | 398 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-17 | 300 | 400 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.408 | 305 | 400 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-9 | 311 | 400 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-13 | 315 | 399 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.19E-15 | 321 | 398 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.3E-16 | 706 | 798 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.65E-15 | 708 | 798 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.54E-17 | 711 | 802 | No hit | No description |
SMART | SM01019 | 0.001 | 713 | 804 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-11 | 731 | 802 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.364 | 738 | 804 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.46E-15 | 906 | 1008 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-13 | 906 | 1008 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.86E-14 | 911 | 1008 | No hit | No description |
PROSITE profile | PS50863 | 7.923 | 913 | 1010 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.015 | 913 | 1010 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1538 aa Download sequence Send to blast |
MKTDLEGLRP CASFTETCVE SHGAQCQLNE DQSVGAPSFL KMIRDKHLPN NAGFVRLPSS 60 FMEQHGPRIG NVVTLKGPSG WVGQASVSND EGFAFCGGWK QFVVHHNIGA GDYVVCTLIA 120 DSKFSVKIYN KFGCEKDHPS HALTPEGPKV HLSIFKPSEG GREFSLTNLG GKRKTLDEVK 180 SLSGIGKKLC MQQLGLERSI VEEGNAEIET KLHIASEFKS DHDPDPQQSV DTVRASTPVQ 240 VGPLSEDYSS SESEKRNVEM EEIDDIDDCN KAIVRKRAHR AVYETEMRRF MAMEAAQAYE 300 TANPRTMLVV NKTAITKSQS YFSSVFARKW FPEERAQLLL IDDADNKWAV TFIPTASHMV 360 LGAGWAKFVR DNKLEKGDVV VFELKNPNTL TLTVHIFRVK DYTFVRVANL GRTKHPDSSM 420 VSTPSKTDNL SGNARVKHTA ESREDNQSPG TSDITELKSQ SPMAPQYAAV AKYFANRASP 480 SIYGNQKVCD GVVQESEPQK ANETNSTAEE CGIIRHIGES FTISKQGLHF LMPGSQSRER 540 EETLVELNDK ISAYSTQKNL QTAAPFTALP SGISEIQCFY SPATHSPQQL QSLLAQQEQI 600 ADGMPAHLGG TVFLAPQGQK PCSTQVQDRT TIMNLQPNQP LETSQLDESH TGVTVPPGLP 660 KEVEFPRIMK DDPPARPRER WEIKPRRPRP PTDAERQRAM DEASEFWTPN PHVMVVLKPS 720 QVYAGFSLTL RCAALPDETR DATLVDSTGQ TWMCKWLVNH SGRRLSAGWK RFAVDHLLEE 780 GDVCVFEMID RINLTLLINI FRIELDDHIS EPIEIRKSVE LRRPPADPTK RKRKSRAKPK 840 GLGPPVPKLP AYSGCRMEKL GGSSPLPRGA NVLPNMPSYK YTALQSRRRP VTMEERRRTE 900 LGARNLNTKN PSVTVVMRNS SVYCHFLVSI PSAFAKQWLP RKLVRVTLVD SGGQKSTARW 960 AGNRKKSACL KSFREFSLSH CLEEGDALVF ELMDPNPNNP VFLVHVFRVV ELPSTRMSPK 1020 DWETHYKLDV MIGTMKPVVP LQAYQRRYDG QSRMLQANQP LSSGSEDEQD EPSGVSLQPP 1080 MLSELSPKSK TKAIYSALVK RKTIGNKENG YSDPVQHDLG EDTSSTVEKL AHTAQGQIEN 1140 YADKATHIFQ LERLGRQQIS RDIMPIFKKN PRIDADGPEA VIAGLSNQAC REQVEHVHDK 1200 PDSKAGFHAS HVADDTSQNA KNVKPMVPKT PKKEPLEEVG PPKEGKKTRR KTTQRREGRD 1260 DFLQVAVGET SNWEPQDLNL SRQENIEISD VLRKTLLGSE PKNGVSQPLV PSTHELELLL 1320 DSNASRPDPL SRTKDLQDNK RFISGSNYQD QTGMHGTEHS VRNQKVSIAA DQQTLDRVGA 1380 VENEQWLKPK PEPVHGGDIV RGMRCEGGSC VESGQLEVPR PGKEKGGLVK VDTTTQFKQV 1440 FFGSIIDGVR SEVGAHNSDA ERKRLCHVEQ GLTPKTRDRV DRWQFLQPGM VVNSNADKNV 1500 QASNNNNNRI SWFNHPSIVS QAGKAQASAT WEKRREK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024381077.1 | 0.0 | uncharacterized protein LOC112284923 | ||||
Refseq | XP_024381078.1 | 0.0 | uncharacterized protein LOC112284923 | ||||
Refseq | XP_024381079.1 | 0.0 | uncharacterized protein LOC112284923 | ||||
TrEMBL | A0A2K1KD75 | 0.0 | A0A2K1KD75_PHYPA; Uncharacterized protein | ||||
STRING | PP1S97_269V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49480.1 | 7e-14 | related to vernalization1 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c7_26690V3.2.p |