PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_24100V3.2.p
Common NamePHYPADRAFT_173068
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 562aa    MW: 61020.8 Da    PI: 8.038
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_24100V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041237261123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        ++C+   C+k+F+++ ++k H +tH
  Pp3c7_24100V3.2.p 237 FRCQheGCNKTFKNPQTMKMHHKTH 261
                        89**********************9 PP
2zf-C2H2140.00015294312220
                        EETTTTEEESSHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                        +Cp+C+k+F   ++L+rH 
  Pp3c7_24100V3.2.p 294 RCPKCKKTFVGLYELRRHF 312
                        7*****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.02E-6233262No hitNo description
Gene3DG3DSA:3.30.160.601.5E-8235261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003237261IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221237261IPR007087Zinc finger, C2H2
PROSITE patternPS000280239261IPR007087Zinc finger, C2H2
SMARTSM003550.23293316IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.224293322IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-6293343No hitNo description
PROSITE patternPS000280295316IPR007087Zinc finger, C2H2
SMARTSM00355160323343IPR015880Zinc finger, C2H2-like
SMARTSM00355210349370IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MAVAAQGLSF YDFSQVAPVS NPTLMLNENG TVSYGSATLS SGAGQSLLSS FGEGSNFGIP  60
TWPESLYASY NTTSLFNLQN FSTPFEDPSP DLFLGSDSDF FNQINGMQSS LASTPAVMHP  120
NLVSTLKSIV APGPGSPRQD SPHFSYHTCF DQPTTTQQQV SRFQQQQNDR LGSSLLSYAF  180
KPSDVKPIIV APRTDEADCQ AVPLACSQSL KIEKSESEDS IEAAVVSVDL IQNRRPFRCQ  240
HEGCNKTFKN PQTMKMHHKT HYTDGFAANK LGVQPLPTLC NSLKAGHNKK IPSRCPKCKK  300
TFVGLYELRR HFGRKHSEGE KPHGCRKCGK KFYVEVDVRD HEKLCGEPIE CKCGLKFAFK  360
CNLVAHKKAH PACQDTQTSP SMSSSTSGSA ISSNINSNNN QSSSSSSDSD QSRGGSSSPA  420
SGRGTRRPRE ESISPVNSFH STPLPELKDI PEAPQFKCAR YDFSGNFPFS NDTSNSWSSP  480
SSISQYLQVP TFSHFNPLST ASLFPTQQQT PSSFAFHLPQ QSPSFDQSYG TIAGLDMGMP  540
SNYNSSSSSL GSSLQGMVRL T*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.180230.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381591.10.0zinc finger protein JACKDAW-like
TrEMBLA0A2K1KCU20.0A0A2K1KCU2_PHYPA; Uncharacterized protein
STRINGPP1S407_13V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.13e-13WIP domain protein 5
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]