PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_18530V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 2007aa    MW: 216818 Da    PI: 8.6909
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_18530V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2414.9e-13639688155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s++ GVr ++ +g + AeIr p       kr +lg+f t+e Aa+a++ a++ ++g
  Pp3c7_18530V3.2.p 639 SRFVGVRKRP-WGAYGAEIRTP-----EgKRLWLGTFTTEEAAARAYDDAARIFRG 688
                        6899******.**********8.....55**********************98887 PP
2AP222.43.1e-079711016453
                AP2    4 kGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53  
                          GVr    +gr++A I+d      +rk++++g + +  eAa+a+++ +++l
  Pp3c7_18530V3.2.p  971 VGVRKSQ-SGRFEATIYD----RsMRKKVYVGMYSSMLEAARARDQKALEL 1016
                         69*9655.8*********....3356**********************997 PP
3AP2323e-1013871434455
                AP2    4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55  
                          GV   + +gr+ A I++p++   +k++++g ++t+eeAa a+++ + +++g
  Pp3c7_18530V3.2.p 1387 MGVQATP-SGRFKAKIYVPKT---KKHIYIGIYDTPEEAAHAYDEVAYRKRG 1434
                         6887778.7*********954...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138916.0E-13228290IPR025927Potential DNA-binding domain
SuperFamilySSF541711.24E-15639696IPR016177DNA-binding domain
PfamPF008475.2E-7639683IPR001471AP2/ERF domain
CDDcd000184.05E-14639695No hitNo description
Gene3DG3DSA:3.30.730.101.3E-23640696IPR001471AP2/ERF domain
SMARTSM003807.8E-28640702IPR001471AP2/ERF domain
PROSITE profilePS5103220.85640696IPR001471AP2/ERF domain
PRINTSPR003671.2E-5641652IPR001471AP2/ERF domain
PRINTSPR003671.2E-5662678IPR001471AP2/ERF domain
SMARTSM003801.3E-49691031IPR001471AP2/ERF domain
PROSITE profilePS5103210.7589691025IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-79711026IPR016177DNA-binding domain
CDDcd000184.58E-119711026No hitNo description
Gene3DG3DSA:3.30.730.108.9E-109721026IPR001471AP2/ERF domain
CDDcd000181.13E-1613851444No hitNo description
PROSITE profilePS5103214.92113851442IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-1613851443IPR001471AP2/ERF domain
SMARTSM003805.6E-1413851448IPR001471AP2/ERF domain
PfamPF008474.5E-513861434IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-1313861443IPR016177DNA-binding domain
PROSITE profilePS5103211.53515991665IPR001471AP2/ERF domain
CDDcd000185.24E-1016081666No hitNo description
SMARTSM003801.6E-716091671IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-816101666IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-1016101666IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 2007 aa     Download sequence    Send to blast
MDNIGMAAEC EATEAEAPSE VHRSDTELKL VNFKVEPAES DLKIRNENEA LAVSPSVSAN  60
PTVSNLLPAR ARTAVWRQKV HSGVGASVLV GQRILEFPSP AMATQIAPGQ RVSHEGSRPE  120
SSSTLPVACR SLPPASDLMV FTPNLLTPAP GIRLPSPGLS PLPVSLSLYS QGLPSILATH  180
RLIPAVPSNP TPAPGCPVPL TPTNSSRVPA RSPESNGKDI KARSGHLCHS STQSCSQYCL  240
QGYKFCLWHI LEDPSAPYKQ CDFVEYPSRE RCLFPVSLNS ENTRFCQMHK QVKGFSINPV  300
TLKNQQSMEH PPLGEFSVLV LAAAVAHQME IVAPPKLWTS LVVNQLPVVV SSNTVPAKEE  360
LGTPFFQRST SGKKTAALVQ GDPKPVEPVP HTISKPASRR KQGGLHIKED GKGFGSTSGP  420
STNVCLECNL DNANCRATGC GFEDATLGSN TQLKIGSSST KVASELETFR AQLGDRLSSH  480
GISLPYTMSS SGGKAGIDHG SGAGCRSSHR SGSPHDKLIR PNTTGQVFSN GGPTKRRAHG  540
APSVTCLVDI GPIELNKVGL MCSPQYLPGM LLGKRSYEQL NILPTIDFGG LDMATMGVRC  600
GPREPRAIPG LAIKRKSKVQ TPRDSSSLGR GQGRRVFFSR FVGVRKRPWG AYGAEIRTPE  660
GKRLWLGTFT TEEAAARAYD DAARIFRGKS AVTNFVQGSE FDFGMSSPFA LGSSSTSNEE  720
ENVSDGLGAK KRSASNLKKN DEESEVVPLG IAQSNPANAD GIGMKNKMDS FGSFIETINL  780
LGGFETNGKG SVKALVPTSE GSDRTPSVHL KLTGGLQKEC SSRKTSDEAT DQGGSVKKDK  840
GFGRFSWSEK RLDEDTSGPD RLLLLSNFAI SQEGMEMEEK LDSSKNQTKE HGAGAATLVS  900
KTDSGGSDEE SAGPSVAEPG LDMASSLRVK MEEDPGDRGK SAETSIFAEL NEEEEQQLLE  960
IGNGDPEFRL VGVRKSQSGR FEATIYDRSM RKKVYVGMYS SMLEAARARD QKALELGSMS  1020
TLNFPDMRAL QASRNLKVNV EGNKKKPMAQ DIAQSFKKIR LASHNKSVTD TSKVSKRKVP  1080
DSEENCEASE VKSSKCKPLK PSLESEECKP CDGSKTMESD CNDVAKAPNK KSGTAKAPRS  1140
SVSLGHEKLG SEASETAPRR VKRKSEEFQK SEMLTEKELL KTKKQKAEEA EEINTTVKRR  1200
RVPSAKGKAN CGTSDKEPAS VTKEVTKGNV TSKQEFGVVG QGNQPAQRAP RKSNMYRSFA  1260
DSFVESDYAR VYKTTSKRRA MLDKDGRKSD SPSTIPSAEK GPAPSPKQTL PIPPKSRRES  1320
KPQREEGEAK GKDGEERSGQ GSKKPPLSKS KRVSVADEDE QPASRSRSAG KNSAKSSGKR  1380
RAQRNFMGVQ ATPSGRFKAK IYVPKTKKHI YIGIYDTPEE AAHAYDEVAY RKRGATAPLN  1440
FPEAFHAKIK AKQPIKKFLI QLTDAGDFEA MCYDPKVKDY HSVGVFSSVD AARRAGARES  1500
ATMDCSNSDS SGKDDGDKDG DGELCSTKND SVLDSKPMKG KRTKLGCAGN AGSPAAGNVE  1560
EGGSDEDDIF VEEQSQKESV RLMRSKKGSF ARASSNKLIR RGNMTRRADF RGVYCNGHKF  1620
QSIYYNPATK KHTYLGTFLT AEEAARAHDQ VAFGQFGGEA KLNLPEEIET LKRTVNVVGS  1680
NAVLINSTKA NESEEDDDED EGADSRSSSP VAGINEMQNA EAPVDILKAE VLEDEHEEPS  1740
LLFNQNPLSP CAKASEFVGD LSKSNSFKGN FLDIVLKDNN DEDLCNATAD RVRDAKSSQK  1800
PNASGKSNSA ECGLGTEDSK VRERGHRDKE ETDELRLGAD VEEKTGRRVS RRKKYRVSRV  1860
GTACSALEEV VRLSLEKSKV AEQQEEKDEW VGEHGFRGGQ SGTSVEEDKK LRDSSSQKMQ  1920
PRARGDTPPL SQSVGEGSSV SVPRKSKNEV EGESGPAMPL FDVLAGEFLK ASVVLETAEA  1980
DVSKGRLEKE SKTSMSCKSV VDAMNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-14629695571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111971201KRRRV
216681673ETLKRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381343.10.0uncharacterized protein LOC112285068 isoform X2
TrEMBLA0A2K1KC670.0A0A2K1KC67_PHYPA; Uncharacterized protein
STRINGPP1S2_576V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.15e-13ERF family protein